myRT

myRT report for GCA_013912435.1_ASM1391243v1

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Seq: JACEQY010000133.1 Streptomyces sp. PSKA54 133, whole genome shotgun sequence (1941 bp)
Overview 1 RT 1: 343-1754 bp Neighborhood of RT #1 [343, 1855] RVT-GII GIIM Feature: gene Location: 343-495 bp Feature: gene Location: 593-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 809-1469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 809-1 469 bp Feature: domain Description: GIIM Note: maturase Location: 1550-1754 bp Feature: domain Description: GIIM Note: maturase Location: 1 550-1 754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACEQY010000033.1 Streptomyces sp. PSKA54 33, whole genome shotgun sequence (111786 bp)
Overview 1 RT 1: 19969-27323 bp Neighborhood of RT #1 [19969, 27323] MFS_MMR_MDR_like panB RVT_N RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 19969-21558 bp Feature: domain Description: MFS_MMR_MDR_like Location: 20047-21487 bp Feature: domain Description: MFS_MMR_MDR_like Location: 2 0047-2 1487 bp Feature: gene Location: 21843-22727 bp Feature: domain Description: panB Location: 21942-22722 bp Feature: domain Description: panB Location: 2 1942 -2 2 72 2 bp Feature: gene Location: 23014-24768 bp Feature: RT Description: RVT_N Location: 23050-23287 bp Feature: RT Description: RVT_N Location: 2 3050-2 32 87 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23347-24001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3347-2 4001 bp Feature: domain Description: GIIM Note: maturase Location: 24058-24289 bp Feature: domain Description: GIIM Note: maturase Location: 2 4058-2 42 89 bp Feature: gene Location: 25692-26291 bp Feature: domain Description: DDE_Tnp_1 Location: 25698-26229 bp Feature: domain Description: DDE_Tnp_1 Location: 2 5698-2 62 2 9 bp Feature: gene Location: 26916-27323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MMR_MDR_like (cd17504), panB (TIGR00222), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)

Seq: JACEQY010000005.1 Streptomyces sp. PSKA54 5, whole genome shotgun sequence (242914 bp)
Overview 1 RT 1: 164906-170329 bp Neighborhood of RT #1 [164906, 170334] DUF820 RVT-GII GIIM HNH deoA PRK05578 Feature: gene Location: 164906-165169 bp Feature: gene Location: 165241-165942 bp Feature: domain Description: DUF820 Location: 165448-165898 bp Feature: domain Description: DUF820 Location: 165448-165898 bp Feature: gene Location: 165926-167299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165929-166547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165929-166547 bp Feature: domain Description: GIIM Note: maturase Location: 166598-166832 bp Feature: domain Description: GIIM Note: maturase Location: 166598-16683 2 bp Feature: domain Description: HNH Note: nucleases Location: 167159-167258 bp Feature: domain Description: HNH Note: nucleases Location: 167159-167258 bp Feature: gene Location: 168483-169760 bp Feature: domain Description: deoA Location: 168486-169755 bp Feature: domain Description: deoA Location: 168486-169755 bp Feature: gene Location: 169993-170334 bp Feature: domain Description: PRK05578 Location: 169996-170329 bp Feature: domain Description: PRK05578 Location: 169996-1703 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF820, RVT-GII, GIIM (pfam08388), HNH (pfam01844), deoA (PRK05820), PRK05578 (cytidine deaminase; Validated)

Seq: JACEQY010000055.1 Streptomyces sp. PSKA54 55, whole genome shotgun sequence (49361 bp)
Overview 1 RT 1: 1836-7551 bp Neighborhood of RT #1 [1836, 7551] DDE_5 RVT-GII GIIM COG5659 Feature: gene Location: 1836-2648 bp Feature: gene Location: 2702-3079 bp Feature: domain Description: DDE_5 Location: 2777-3032 bp Feature: domain Description: DDE_5 Location: 2777-3032 bp Feature: gene Location: 3661-5145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3952-4645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3952-4 64 5 bp Feature: domain Description: GIIM Note: maturase Location: 4714-4948 bp Feature: domain Description: GIIM Note: maturase Location: 4 714 -4 94 8 bp Feature: gene Location: 5171-6130 bp Feature: domain Description: COG5659 Location: 5255-6062 bp Feature: domain Description: COG5659 Location: 5255-6062 bp Feature: gene Location: 6646-7551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), COG5659 (SRSO17 transposase )

Seq: JACEQY010000081.1 Streptomyces sp. PSKA54 81, whole genome shotgun sequence (24407 bp)
Overview 1 RT 1: 1289-4319 bp Neighborhood of RT #1 [1289, 4399] RVT_N RVT-GII GIIM HAD_type_II Feature: gene Location: 1289-3076 bp Feature: RT Description: RVT_N Location: 1361-1598 bp Feature: RT Description: RVT_N Location: 1361-15 98 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1658-2315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165 8-2315 bp Feature: domain Description: GIIM Note: maturase Location: 2369-2600 bp Feature: domain Description: GIIM Note: maturase Location: 2369-2600 bp Feature: gene Location: 3348-3560 bp Feature: gene Location: 3707-4399 bp Feature: domain Description: HAD_type_II Location: 3728-4319 bp Feature: domain Description: HAD_type_II Location: 3728-4319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HAD_type_II (TIGR01428)