myRT

myRT report for GCA_013912465.1_ASM1391246v1

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Seq: JACEOT010000005.1 Pseudomonas aeruginosa strain PAL1.62 NODE_5_length_289500_cov_18.3646, whole genome shotgun sequence (289500 bp)
Overview 1 RT 1: 194825-205558 bp Neighborhood of RT #1 [194825, 205560] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 194825-195160 bp Feature: domain Description: NERD Location: 194924-195095 bp Feature: domain Description: NERD Location: 1 94924-1 95095 bp Feature: gene Location: 195253-196374 bp Feature: domain Description: COG3177 Location: 195271-196363 bp Feature: domain Description: COG31 77 Location: 1 95271 -1 96363 bp Feature: gene Location: 197097-198782 bp Feature: RT Description: RVT_N Location: 197154-197394 bp Feature: RT Description: RVT_N Location: 1 971 54-1 97394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197442-198078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97442-1 98078 bp Feature: domain Description: GIIM Note: maturase Location: 198132-198363 bp Feature: domain Description: GIIM Note: maturase Location: 1 981 32-1 98363 bp Feature: domain Description: HNH Note: nucleases Location: 198615-198753 bp Feature: domain Description: HNH Note: nucleases Location: 1 9861 5-1 98753 bp Feature: gene Location: 199863-203600 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199971-200628 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 99971 -200628 bp Feature: domain Description: PRK09776 Location: 200841-201312 bp Feature: domain Description: PRK09776 Location: 200841 -201 31 2 bp Feature: domain Description: PAS Location: 201357-201894 bp Feature: domain Description: PAS Location: 201 357-201 894 bp Feature: domain Description: PRK10060 Location: 201903-203550 bp Feature: domain Description: PRK1 0060 Location: 201 903-203550 bp Feature: gene Location: 203707-205560 bp Feature: domain Description: PRK05658 Location: 203719-205558 bp Feature: domain Description: PRK05658 Location: 20371 9-205558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)