myRT

myRT report for GCA_013912485.1_ASM1391248v1

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Seq: JACEOU010000007.1 Pseudomonas aeruginosa strain PAL1.61 NODE_7_length_294462_cov_13.7571, whole genome shotgun sequence (294462 bp)
Overview 1 RT 1: 195441-205749 bp 2 RT 2: 222007-230847 bp Neighborhood of RT #1 [195441, 205751] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [222007, 230876] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 195441-196562 bp Feature: domain Description: COG3177 Location: 195459-196551 bp Feature: domain Description: COG31 77 Location: 1 95459-1 96551 bp Feature: gene Location: 196824-196985 bp Feature: gene Location: 197288-198973 bp Feature: RT Description: RVT_N Location: 197345-197585 bp Feature: RT Description: RVT_N Location: 1 97345-1 97585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197633-198269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97633-1 98269 bp Feature: domain Description: GIIM Note: maturase Location: 198323-198554 bp Feature: domain Description: GIIM Note: maturase Location: 1 98323-1 98554 bp Feature: domain Description: HNH Note: nucleases Location: 198806-198944 bp Feature: domain Description: HNH Note: nucleases Location: 1 98806-1 98944 bp Feature: gene Location: 200054-203791 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 200162-200819 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2001 62-20081 9 bp Feature: domain Description: PRK09776 Location: 201032-201503 bp Feature: domain Description: PRK09776 Location: 201 032-201 503 bp Feature: domain Description: PAS Location: 201554-202085 bp Feature: domain Description: PAS Location: 201 554-202085 bp Feature: domain Description: PRK10060 Location: 202094-203741 bp Feature: domain Description: PRK1 0060 Location: 202094-203741 bp Feature: gene Location: 203898-205751 bp Feature: domain Description: PRK05658 Location: 203910-205749 bp Feature: domain Description: PRK05658 Location: 20391 0-205749 bp Feature: gene Location: 222007-223221 bp Feature: domain Description: PRK10770 Location: 222019-223213 bp Feature: domain Description: PRK1 0770 Location: 22201 9-22321 3 bp Feature: gene Location: 223280-226072 bp Feature: domain Description: LptD Location: 223475-226058 bp Feature: domain Description: LptD Location: 223475-226058 bp Feature: gene Location: 226205-227917 bp Feature: RT Description: RVT_N Location: 226262-226505 bp Feature: RT Description: RVT_N Location: 226262-226505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226550-227183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226550-2271 83 bp Feature: domain Description: YkfC Location: 227396-227546 bp Feature: domain Description: YkfC Location: 227396-227546 bp Feature: domain Description: HNH Note: nucleases Location: 227723-227861 bp Feature: domain Description: HNH Note: nucleases Location: 227723-227861 bp Feature: gene Location: 229189-230205 bp Feature: domain Description: COG3178 Location: 229192-230191 bp Feature: domain Description: COG31 78 Location: 2291 92-2301 91 bp Feature: gene Location: 230202-230876 bp Feature: domain Description: NTP_transferase_like_1 Location: 230208-230847 bp Feature: domain Description: NTP_transferase_like_1 Location: 230208-230847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)