myRT

myRT report for GCA_013912585.1_ASM1391258v1

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Seq: JACEOZ010000016.1 Pseudomonas aeruginosa strain PAL1.55 NODE_16_length_151697_cov_13.9004, whole genome shotgun sequence (151697 bp)
Overview 1 RT 1: 112358-116737 bp Neighborhood of RT #1 [112358, 116737] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 112358-113185 bp Feature: domain Description: ABC_phnC Location: 112388-113102 bp Feature: domain Description: ABC_phnC Location: 1 1 2388-1 1 31 02 bp Feature: gene Location: 113528-114169 bp Feature: domain Description: DUF772 Location: 113678-113873 bp Feature: domain Description: DUF772 Location: 1 1 3678-1 1 3873 bp Feature: gene Location: 114558-115826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114771-115428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4771 -1 1 5428 bp Feature: domain Description: GIIM Note: maturase Location: 115506-115728 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 5506-1 1 5728 bp Feature: gene Location: 115976-116374 bp Feature: gene Location: 116558-116737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JACEOZ010000029.1 Pseudomonas aeruginosa strain PAL1.55 NODE_29_length_64394_cov_12.3682, whole genome shotgun sequence (64394 bp)
Overview 1 RT 1: 34485-37144 bp Neighborhood of RT #1 [34485, 37170] RVT-UG17 HipB Feature: gene Location: 34485-35849 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34713-35316 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34713-35316 bp Feature: gene Location: 36378-36803 bp Feature: gene Location: 36889-37170 bp Feature: domain Description: HipB Location: 36910-37144 bp Feature: domain Description: HipB Location: 36910-37144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, HipB (COG1396)

Seq: JACEOZ010000007.1 Pseudomonas aeruginosa strain PAL1.55 NODE_7_length_279550_cov_14.1233, whole genome shotgun sequence (279550 bp)
Overview 1 RT 1: 221031-229869 bp Neighborhood of RT #1 [221031, 229898] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 221031-222245 bp Feature: domain Description: PRK10770 Location: 221043-222237 bp Feature: domain Description: PRK10770 Location: 221043 -22223 7 bp Feature: gene Location: 222304-225093 bp Feature: domain Description: LptD Location: 222499-225079 bp Feature: domain Description: LptD Location: 222499-225079 bp Feature: gene Location: 225226-226938 bp Feature: domain Description: RVT_N Location: 225283-225526 bp Feature: domain Description: RVT_N Location: 225283 -225526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225571-226207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225571-226207 bp Feature: domain Description: YkfC Location: 226417-226567 bp Feature: domain Description: YkfC Location: 226417-226567 bp Feature: domain Description: HNH Note: nucleases Location: 226744-226882 bp Feature: domain Description: HNH Note: nucleases Location: 226744-226882 bp Feature: gene Location: 228211-229227 bp Feature: domain Description: COG3178 Location: 228214-229213 bp Feature: domain Description: COG3 178 Location: 228214-229213 bp Feature: gene Location: 229224-229898 bp Feature: domain Description: NTP_transferase_like_1 Location: 229230-229869 bp Feature: domain Description: NTP_transferase_like_1 Location: 22923 0-229869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)