myRT

myRT report for GCA_013912765.1_ASM1391276v1

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Seq: JACEPI010000004.1 Pseudomonas aeruginosa strain PAL1.46 NODE_4_length_387924_cov_24.1894, whole genome shotgun sequence (387924 bp)
Overview 1 RT 1: 293249-303982 bp Neighborhood of RT #1 [293249, 303984] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 293249-293584 bp Feature: domain Description: NERD Location: 293348-293519 bp Feature: domain Description: NERD Location: 293348-29351 9 bp Feature: gene Location: 293677-294798 bp Feature: domain Description: COG3177 Location: 293695-294787 bp Feature: domain Description: COG31 77 Location: 293695-294787 bp Feature: gene Location: 295521-297206 bp Feature: RT Description: RVT_N Location: 295578-295818 bp Feature: RT Description: RVT_N Location: 295578-29581 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295866-296502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295866-296502 bp Feature: domain Description: GIIM Note: maturase Location: 296556-296787 bp Feature: domain Description: GIIM Note: maturase Location: 296556-296787 bp Feature: domain Description: HNH Note: nucleases Location: 297039-297177 bp Feature: domain Description: HNH Note: nucleases Location: 297039-2971 77 bp Feature: gene Location: 298287-302024 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 298395-299052 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 298395-299052 bp Feature: domain Description: PRK09776 Location: 299265-299736 bp Feature: domain Description: PRK09776 Location: 299265-299736 bp Feature: domain Description: PAS Location: 299781-300318 bp Feature: domain Description: PAS Location: 299781 -30031 8 bp Feature: domain Description: PRK10060 Location: 300327-301974 bp Feature: domain Description: PRK1 0060 Location: 300327-301 974 bp Feature: gene Location: 302131-303984 bp Feature: domain Description: PRK05658 Location: 302143-303982 bp Feature: domain Description: PRK05658 Location: 3021 43-303982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)