myRT

myRT report for GCA_013912985.1_ASM1391298v1

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Seq: JACEPT010000076.1 Pseudomonas aeruginosa strain PAL1.32 NODE_76_length_2421_cov_56.3221, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 86-2418 bp Neighborhood of RT #1 [86, 2418] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 86-1804 bp Feature: RT Description: RVT_N Location: 143-380 bp Feature: RT Description: RVT_N Location: 1 43-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 -1 082 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1367 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 36-1 367 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1757 bp Feature: domain Description: HNHc Note: nucleases Location: 1 601 -1 757 bp Feature: gene Location: 2074-2202 bp Feature: gene Location: 2233-2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACEPT010000007.1 Pseudomonas aeruginosa strain PAL1.32 NODE_7_length_233176_cov_30.4726, whole genome shotgun sequence (233176 bp)
Overview 1 RT 1: 63536-72379 bp 2 RT 2: 88644-99888 bp Neighborhood of RT #1 [63536, 72387] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88644, 99893] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD zf-C4_Topoisom Feature: gene Location: 63536-64210 bp Feature: domain Description: NTP_transferase_like_1 Location: 63542-64181 bp Feature: domain Description: NTP_transferase_like_1 Location: 63542 -64181 bp Feature: gene Location: 64207-65223 bp Feature: domain Description: COG3178 Location: 64210-65209 bp Feature: domain Description: COG3178 Location: 642 10-652 09 bp Feature: gene Location: 66495-68207 bp Feature: RT Description: RVT_N Location: 66552-66795 bp Feature: RT Description: RVT_N Location: 66552 -66795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66840-67473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66840-67473 bp Feature: domain Description: YkfC Location: 67686-67836 bp Feature: domain Description: YkfC Location: 67686-67836 bp Feature: domain Description: HNH Note: nucleases Location: 68013-68151 bp Feature: domain Description: HNH Note: nucleases Location: 68013-68151 bp Feature: gene Location: 68340-71114 bp Feature: domain Description: LptD Location: 68535-71100 bp Feature: domain Description: LptD Location: 68535-71100 bp Feature: gene Location: 71173-72387 bp Feature: domain Description: PRK10770 Location: 71185-72379 bp Feature: domain Description: PRK10770 Location: 71185-72 379 bp Feature: gene Location: 88644-90497 bp Feature: domain Description: PRK05658 Location: 88656-90495 bp Feature: domain Description: PRK05658 Location: 88656-90495 bp Feature: gene Location: 90604-94341 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90712-91369 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 90712 -91369 bp Feature: domain Description: PRK09776 Location: 91582-92053 bp Feature: domain Description: PRK09776 Location: 91582 -92 053 bp Feature: domain Description: PAS Location: 92110-92635 bp Feature: domain Description: PAS Location: 92 110-92 635 bp Feature: domain Description: PRK10060 Location: 92647-94291 bp Feature: domain Description: PRK10060 Location: 92 647-942 91 bp Feature: gene Location: 95422-97107 bp Feature: RT Description: RVT_N Location: 95479-95719 bp Feature: RT Description: RVT_N Location: 95479-95719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95767-96403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95767-96403 bp Feature: domain Description: GIIM Note: maturase Location: 96457-96688 bp Feature: domain Description: GIIM Note: maturase Location: 96457-96688 bp Feature: domain Description: HNH Note: nucleases Location: 96940-97078 bp Feature: domain Description: HNH Note: nucleases Location: 96940-97078 bp Feature: gene Location: 97830-98951 bp Feature: domain Description: COG3177 Location: 97848-98940 bp Feature: domain Description: COG3177 Location: 97848-98940 bp Feature: gene Location: 99123-99893 bp Feature: domain Description: NERD Location: 99222-99555 bp Feature: domain Description: NERD Location: 992 2 2 -99555 bp Feature: domain Description: zf-C4_Topoisom Location: 99774-99888 bp Feature: domain Description: zf-C4_Topoisom Location: 99774-99888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378), zf-C4_Topoisom (pfam01396)