myRT

myRT report for GCA_013913035.1_ASM1391303v1

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Seq: JACEPW010000001.1 Pseudomonas aeruginosa strain PAL1.29 NODE_1_length_637873_cov_20.0363, whole genome shotgun sequence (637873 bp)
Overview 1 RT 1: 82024-89171 bp Neighborhood of RT #1 [82024, 89335] STN TonB-siderophor YHI9 RVT-UG2 PRK06333 HxlR Feature: gene Location: 82024-84426 bp Feature: domain Description: STN Location: 82144-82297 bp Feature: domain Description: STN Location: 821 44-82297 bp Feature: domain Description: TonB-siderophor Location: 82405-84364 bp Feature: domain Description: TonB-siderophor Location: 82405-84364 bp Feature: gene Location: 84587-85423 bp Feature: domain Description: YHI9 Location: 84599-85415 bp Feature: domain Description: YHI9 Location: 84599-8541 5 bp Feature: gene Location: 85607-86953 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 85856-86642 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 85856-86642 bp Feature: gene Location: 87452-88720 bp Feature: domain Description: PRK06333 Location: 87458-88715 bp Feature: domain Description: PRK06333 Location: 87458-8871 5 bp Feature: gene Location: 88829-89335 bp Feature: domain Description: HxlR Location: 88853-89171 bp Feature: domain Description: HxlR Location: 88853-891 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STN (smart00965), TonB-siderophor (TIGR01783), YHI9 (COG0384), RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)

Seq: JACEPW010000004.1 Pseudomonas aeruginosa strain PAL1.29 NODE_4_length_377570_cov_24.684, whole genome shotgun sequence (377570 bp)
Overview 1 RT 1: 292514-302820 bp 2 RT 2: 319078-327916 bp Neighborhood of RT #1 [292514, 302822] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319078, 327945] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 292514-293635 bp Feature: domain Description: COG3177 Location: 292532-293624 bp Feature: domain Description: COG3177 Location: 2 92 532 -2 9362 4 bp Feature: gene Location: 293894-294031 bp Feature: gene Location: 294359-296044 bp Feature: domain Description: RVT_N Location: 294416-294656 bp Feature: domain Description: RVT_N Location: 2 94416-2 94656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294704-295340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 94704-2 95340 bp Feature: domain Description: GIIM Note: maturase Location: 295394-295625 bp Feature: domain Description: GIIM Note: maturase Location: 2 95394-2 9562 5 bp Feature: domain Description: HNH Note: nucleases Location: 295877-296015 bp Feature: domain Description: HNH Note: nucleases Location: 2 95877-2 96015 bp Feature: gene Location: 297125-300862 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297233-297890 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 972 33-2 97890 bp Feature: domain Description: PRK09776 Location: 298103-298574 bp Feature: domain Description: PRK09776 Location: 2 98103-2 98574 bp Feature: domain Description: PAS Location: 298631-299156 bp Feature: domain Description: PAS Location: 2 98631-2 99156 bp Feature: domain Description: PRK10060 Location: 299165-300812 bp Feature: domain Description: PRK10060 Location: 2 99165-300812 bp Feature: gene Location: 300969-302822 bp Feature: domain Description: PRK05658 Location: 300981-302820 bp Feature: domain Description: PRK05658 Location: 300981-302 82 0 bp Feature: gene Location: 319078-320292 bp Feature: domain Description: PRK10770 Location: 319090-320284 bp Feature: domain Description: PRK10770 Location: 319090-32 02 84 bp Feature: gene Location: 320351-323140 bp Feature: domain Description: LptD Location: 320546-323126 bp Feature: domain Description: LptD Location: 32 0546-32 312 6 bp Feature: gene Location: 323273-324985 bp Feature: domain Description: RVT_N Location: 323330-323573 bp Feature: domain Description: RVT_N Location: 32 3330-32 3573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323618-324254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 3618-32 42 54 bp Feature: domain Description: YkfC Location: 324464-324614 bp Feature: domain Description: YkfC Location: 32 4464-32 4614 bp Feature: domain Description: HNH Note: nucleases Location: 324791-324929 bp Feature: domain Description: HNH Note: nucleases Location: 32 4791-32 492 9 bp Feature: gene Location: 326258-327274 bp Feature: domain Description: COG3178 Location: 326261-327260 bp Feature: domain Description: COG3178 Location: 32 62 61-32 72 60 bp Feature: gene Location: 327271-327945 bp Feature: domain Description: NTP_transferase_like_1 Location: 327277-327916 bp Feature: domain Description: NTP_transferase_like_1 Location: 32 72 77-32 7916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)