myRT

myRT report for GCA_013913125.1_ASM1391312v1

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Seq: JACEQA010000027.1 Pseudomonas aeruginosa strain PAL1.25 NODE_27_length_96784_cov_12.3739, whole genome shotgun sequence (96784 bp)
Overview 1 RT 1: 89346-96260 bp Neighborhood of RT #1 [89346, 96274] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII IS5 ALDH_F5_SSADH_GabD Feature: gene Location: 89346-90881 bp Feature: domain Description: LZ_Tnp_IS66 Location: 89487-89700 bp Feature: domain Description: LZ_Tnp_IS66 Location: 89487-89700 bp Feature: domain Description: zf-IS66 Location: 89721-89847 bp Feature: domain Description: zf-IS66 Location: 89721 -89847 bp Feature: domain Description: DDE_Tnp_IS66 Location: 89889-90732 bp Feature: domain Description: DDE_Tnp_IS66 Location: 89889-90732 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 90753-90864 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 90753-90864 bp Feature: gene Location: 90945-91280 bp Feature: domain Description: TnpB_IS66 Location: 90963-91251 bp Feature: domain Description: TnpB_IS66 Location: 90963-91 251 bp Feature: gene Location: 91738-93216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92452-93064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92452-93064 bp Feature: gene Location: 93476-94456 bp Feature: domain Description: IS5 Location: 93665-94424 bp Feature: domain Description: IS5 Location: 93665-94424 bp Feature: gene Location: 94829-96274 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 94913-96260 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 9491 3-96260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), RVT-GII, IS5 (COG3039), ALDH_F5_SSADH_GabD (cd07103)

Seq: JACEQA010000004.1 Pseudomonas aeruginosa strain PAL1.25 NODE_4_length_289367_cov_17.533, whole genome shotgun sequence (289367 bp)
Overview 1 RT 1: 194814-205547 bp Neighborhood of RT #1 [194814, 205549] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 194814-195149 bp Feature: domain Description: NERD Location: 194913-195084 bp Feature: domain Description: NERD Location: 194913-195084 bp Feature: gene Location: 195242-196363 bp Feature: domain Description: COG3177 Location: 195260-196352 bp Feature: domain Description: COG3177 Location: 1952 60-196352 bp Feature: gene Location: 197086-198771 bp Feature: RT Description: RVT_N Location: 197143-197383 bp Feature: RT Description: RVT_N Location: 197143-197383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197431-198067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197431-198067 bp Feature: domain Description: GIIM Note: maturase Location: 198121-198352 bp Feature: domain Description: GIIM Note: maturase Location: 19812 1-198352 bp Feature: domain Description: HNH Note: nucleases Location: 198604-198742 bp Feature: domain Description: HNH Note: nucleases Location: 198604-198742 bp Feature: gene Location: 199852-203589 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199960-200617 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 199960-2 00617 bp Feature: domain Description: PRK09776 Location: 200830-201301 bp Feature: domain Description: PRK09776 Location: 2 00830-2 01301 bp Feature: domain Description: PAS Location: 201346-201883 bp Feature: domain Description: PAS Location: 2 01346-2 01883 bp Feature: domain Description: PRK10060 Location: 201892-203539 bp Feature: domain Description: PRK10060 Location: 2 01892 -2 03539 bp Feature: gene Location: 203696-205549 bp Feature: domain Description: PRK05658 Location: 203708-205547 bp Feature: domain Description: PRK05658 Location: 2 03708-2 05547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)