myRT

myRT report for GCA_013913215.1_ASM1391321v1

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Seq: JACEQE010000068.1 Pseudomonas aeruginosa strain PAL1.20 NODE_68_length_2418_cov_46.694, whole genome shotgun sequence (2418 bp)
Overview 1 RT 1: 1-2289 bp Neighborhood of RT #1 [1, 2336] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-189 bp Feature: gene Location: 220-348 bp Feature: gene Location: 618-2336 bp Feature: RT Description: RVT_N Location: 675-912 bp Feature: RT Description: RVT_N Location: 675-91 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1 61 4 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1 668-1 899 bp Feature: domain Description: HNHc Note: nucleases Location: 2133-2289 bp Feature: domain Description: HNHc Note: nucleases Location: 21 33-2289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACEQE010000007.1 Pseudomonas aeruginosa strain PAL1.20 NODE_7_length_233335_cov_18.6006, whole genome shotgun sequence (233335 bp)
Overview 1 RT 1: 63565-72409 bp 2 RT 2: 88674-99918 bp Neighborhood of RT #1 [63565, 72417] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88674, 99923] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD zf-C4_Topoisom Feature: gene Location: 63565-64239 bp Feature: domain Description: NTP_transferase_like_1 Location: 63571-64210 bp Feature: domain Description: NTP_transferase_like_1 Location: 63571-642 10 bp Feature: gene Location: 64236-65252 bp Feature: domain Description: COG3178 Location: 64239-65238 bp Feature: domain Description: COG3178 Location: 642 39-652 38 bp Feature: gene Location: 66525-68237 bp Feature: RT Description: RVT_N Location: 66582-66825 bp Feature: RT Description: RVT_N Location: 66582 -6682 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66870-67506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66870-67506 bp Feature: domain Description: YkfC Location: 67716-67866 bp Feature: domain Description: YkfC Location: 67716-67866 bp Feature: domain Description: HNH Note: nucleases Location: 68043-68181 bp Feature: domain Description: HNH Note: nucleases Location: 68043-68181 bp Feature: gene Location: 68370-71144 bp Feature: domain Description: LptD Location: 68565-71130 bp Feature: domain Description: LptD Location: 68565-71130 bp Feature: gene Location: 71203-72417 bp Feature: domain Description: PRK10770 Location: 71215-72409 bp Feature: domain Description: PRK10770 Location: 712 15-72 409 bp Feature: gene Location: 88674-90527 bp Feature: domain Description: PRK05658 Location: 88686-90525 bp Feature: domain Description: PRK05658 Location: 88686-9052 5 bp Feature: gene Location: 90634-94371 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90742-91399 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 90742 -91399 bp Feature: domain Description: PRK09776 Location: 91612-92083 bp Feature: domain Description: PRK09776 Location: 91612 -92 083 bp Feature: domain Description: PAS Location: 92140-92665 bp Feature: domain Description: PAS Location: 92 140-92 665 bp Feature: domain Description: PRK10060 Location: 92677-94321 bp Feature: domain Description: PRK10060 Location: 92 677-9432 1 bp Feature: gene Location: 95452-97137 bp Feature: RT Description: RVT_N Location: 95509-95749 bp Feature: RT Description: RVT_N Location: 95509-95749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95797-96433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95797-96433 bp Feature: domain Description: GIIM Note: maturase Location: 96487-96718 bp Feature: domain Description: GIIM Note: maturase Location: 96487-96718 bp Feature: domain Description: HNH Note: nucleases Location: 96970-97108 bp Feature: domain Description: HNH Note: nucleases Location: 96970-97108 bp Feature: gene Location: 97860-98981 bp Feature: domain Description: COG3177 Location: 97878-98970 bp Feature: domain Description: COG3177 Location: 97878-98970 bp Feature: gene Location: 99153-99923 bp Feature: domain Description: NERD Location: 99252-99585 bp Feature: domain Description: NERD Location: 992 52 -99585 bp Feature: domain Description: zf-C4_Topoisom Location: 99804-99918 bp Feature: domain Description: zf-C4_Topoisom Location: 99804-99918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378), zf-C4_Topoisom (pfam01396)