myRT

myRT report for GCA_013913365.1_ASM1391336v1

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Seq: JACEQM010000015.1 Pseudomonas aeruginosa strain PAL1.10 NODE_15_length_151691_cov_22.6919, whole genome shotgun sequence (151691 bp)
Overview 1 RT 1: 112357-116736 bp Neighborhood of RT #1 [112357, 116736] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 112357-113184 bp Feature: domain Description: ABC_phnC Location: 112387-113101 bp Feature: domain Description: ABC_phnC Location: 1 1 2387-1 1 31 01 bp Feature: gene Location: 113527-114168 bp Feature: domain Description: DUF772 Location: 113677-113872 bp Feature: domain Description: DUF772 Location: 1 1 3677-1 1 3872 bp Feature: gene Location: 114557-115825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114770-115427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4770-1 1 5427 bp Feature: domain Description: GIIM Note: maturase Location: 115505-115727 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 5505-1 1 5727 bp Feature: gene Location: 115975-116373 bp Feature: gene Location: 116557-116736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JACEQM010000028.1 Pseudomonas aeruginosa strain PAL1.10 NODE_28_length_64397_cov_20.1625, whole genome shotgun sequence (64397 bp)
Overview 1 RT 1: 27228-29380 bp Neighborhood of RT #1 [27228, 29913] HipB RVT-UG17 Feature: gene Location: 27228-27509 bp Feature: domain Description: HipB Location: 27249-27483 bp Feature: domain Description: HipB Location: 2 72 49-2 7483 bp Feature: gene Location: 27595-28020 bp Feature: gene Location: 28549-29913 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28777-29380 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 8777-2 9380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17

Seq: JACEQM010000005.1 Pseudomonas aeruginosa strain PAL1.10 NODE_5_length_376954_cov_23.3325, whole genome shotgun sequence (376954 bp)
Overview 1 RT 1: 291895-302201 bp 2 RT 2: 318459-327297 bp Neighborhood of RT #1 [291895, 302203] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [318459, 327326] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 291895-293016 bp Feature: domain Description: COG3177 Location: 291913-293005 bp Feature: domain Description: COG3 177 Location: 291913 -293 005 bp Feature: gene Location: 293275-293412 bp Feature: gene Location: 293740-295425 bp Feature: domain Description: RVT_N Location: 293797-294037 bp Feature: domain Description: RVT_N Location: 293 797-29403 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294085-294721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294085-294721 bp Feature: domain Description: GIIM Note: maturase Location: 294775-295006 bp Feature: domain Description: GIIM Note: maturase Location: 294775-295006 bp Feature: domain Description: HNH Note: nucleases Location: 295258-295396 bp Feature: domain Description: HNH Note: nucleases Location: 295258-2953 96 bp Feature: gene Location: 296506-300243 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 296614-297271 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 296614-297271 bp Feature: domain Description: PRK09776 Location: 297484-297955 bp Feature: domain Description: PRK09776 Location: 297484-297955 bp Feature: domain Description: PAS Location: 298045-298537 bp Feature: domain Description: PAS Location: 298045-29853 7 bp Feature: domain Description: PRK10060 Location: 298546-300193 bp Feature: domain Description: PRK10060 Location: 298546-3 00193 bp Feature: gene Location: 300350-302203 bp Feature: domain Description: PRK05658 Location: 300362-302201 bp Feature: domain Description: PRK05658 Location: 3 003 62-3 02201 bp Feature: gene Location: 318459-319673 bp Feature: domain Description: PRK10770 Location: 318471-319665 bp Feature: domain Description: PRK10770 Location: 3 18471-3 19665 bp Feature: gene Location: 319732-322521 bp Feature: domain Description: LptD Location: 319927-322507 bp Feature: domain Description: LptD Location: 3 19927-3 22507 bp Feature: gene Location: 322654-324366 bp Feature: domain Description: RVT_N Location: 322711-322954 bp Feature: domain Description: RVT_N Location: 3 22711-3 22954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322999-323635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 22999-3 23 63 5 bp Feature: domain Description: YkfC Location: 323845-323995 bp Feature: domain Description: YkfC Location: 3 23 845-3 23 995 bp Feature: domain Description: HNH Note: nucleases Location: 324172-324310 bp Feature: domain Description: HNH Note: nucleases Location: 3 24172-3 243 10 bp Feature: gene Location: 325639-326655 bp Feature: domain Description: COG3178 Location: 325642-326641 bp Feature: domain Description: COG3 178 Location: 3 25642-3 26641 bp Feature: gene Location: 326652-327326 bp Feature: domain Description: NTP_transferase_like_1 Location: 326658-327297 bp Feature: domain Description: NTP_transferase_like_1 Location: 3 26658-3 27297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)