myRT

myRT report for GCA_013913435.1_ASM1391343v1

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Seq: JACEQQ010000002.1 Pseudomonas aeruginosa strain PAL1.6 NODE_2_length_377531_cov_23.0204, whole genome shotgun sequence (377531 bp)
Overview 1 RT 1: 292176-302909 bp 2 RT 2: 319167-327987 bp Neighborhood of RT #1 [292176, 302911] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319167, 328016] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 292176-292391 bp Feature: domain Description: NERD Location: 292203-292326 bp Feature: domain Description: NERD Location: 292203-292326 bp Feature: gene Location: 292604-293725 bp Feature: domain Description: COG3177 Location: 292622-293714 bp Feature: domain Description: COG31 77 Location: 292622-29371 4 bp Feature: gene Location: 294448-296133 bp Feature: domain Description: RVT_N Location: 294505-294745 bp Feature: domain Description: RVT_N Location: 294505-294745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294793-295429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294793-295429 bp Feature: domain Description: GIIM Note: maturase Location: 295483-295714 bp Feature: domain Description: GIIM Note: maturase Location: 295483-29571 4 bp Feature: domain Description: HNH Note: nucleases Location: 295966-296104 bp Feature: domain Description: HNH Note: nucleases Location: 295966-2961 04 bp Feature: gene Location: 297214-300951 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297322-297979 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297322-297979 bp Feature: domain Description: PRK09776 Location: 298192-298663 bp Feature: domain Description: PRK09776 Location: 2981 92-298663 bp Feature: domain Description: PAS Location: 298720-299245 bp Feature: domain Description: PAS Location: 298720-299245 bp Feature: domain Description: PRK10060 Location: 299257-300901 bp Feature: domain Description: PRK1 0060 Location: 299257-300901 bp Feature: gene Location: 301058-302911 bp Feature: domain Description: PRK05658 Location: 301070-302909 bp Feature: domain Description: PRK05658 Location: 301 070-302909 bp Feature: gene Location: 319167-320381 bp Feature: domain Description: PRK10770 Location: 319179-320373 bp Feature: domain Description: PRK1 0770 Location: 31 91 79-320373 bp Feature: gene Location: 320440-323211 bp Feature: domain Description: LptD Location: 320635-323197 bp Feature: domain Description: LptD Location: 320635-3231 97 bp Feature: gene Location: 323344-325056 bp Feature: domain Description: RVT_N Location: 323401-323644 bp Feature: domain Description: RVT_N Location: 323401 -323644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323689-324325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323689-324325 bp Feature: domain Description: YkfC Location: 324535-324685 bp Feature: domain Description: YkfC Location: 324535-324685 bp Feature: domain Description: HNH Note: nucleases Location: 324862-325000 bp Feature: domain Description: HNH Note: nucleases Location: 324862-325000 bp Feature: gene Location: 326329-327345 bp Feature: domain Description: COG3178 Location: 326332-327331 bp Feature: domain Description: COG31 78 Location: 326332-327331 bp Feature: gene Location: 327342-328016 bp Feature: domain Description: NTP_transferase_like_1 Location: 327348-327987 bp Feature: domain Description: NTP_transferase_like_1 Location: 327348-327987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JACEQQ010000038.1 Pseudomonas aeruginosa strain PAL1.6 NODE_38_length_46231_cov_22.0077, whole genome shotgun sequence (46231 bp)
Overview 1 RT 1: 34960-39256 bp Neighborhood of RT #1 [34960, 39339] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34960-35139 bp Feature: gene Location: 35323-35721 bp Feature: gene Location: 35871-37139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36084-36741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36084-36741 bp Feature: domain Description: GIIM Note: maturase Location: 36819-37041 bp Feature: domain Description: GIIM Note: maturase Location: 36819-37041 bp Feature: gene Location: 37528-38169 bp Feature: domain Description: DUF772 Location: 37678-37873 bp Feature: domain Description: DUF772 Location: 37678-37873 bp Feature: gene Location: 38512-39339 bp Feature: domain Description: ABC_phnC Location: 38542-39256 bp Feature: domain Description: ABC_phnC Location: 38542 -392 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: JACEQQ010000043.1 Pseudomonas aeruginosa strain PAL1.6 NODE_43_length_36121_cov_19.8797, whole genome shotgun sequence (36121 bp)
Overview 1 RT 1: 1875-9185 bp Neighborhood of RT #1 [1875, 10240] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1875-3014 bp Feature: domain Description: AAA_21 Location: 1947-2016 bp Feature: domain Description: AAA_21 Location: 1947-2016 bp Feature: domain Description: AAA_21 Location: 2490-2820 bp Feature: domain Description: AAA_21 Location: 2490-2820 bp Feature: gene Location: 3014-3571 bp Feature: gene Location: 3568-6588 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4063-4534 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4063 -453 4 bp Feature: gene Location: 7256-8365 bp Feature: domain Description: YeeA Location: 7451-8231 bp Feature: domain Description: YeeA Location: 7451-823 1 bp Feature: gene Location: 8369-10240 bp Feature: domain Description: DUF262 Location: 8417-9185 bp Feature: domain Description: DUF262 Location: 8417-9185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: JACEQQ010000006.1 Pseudomonas aeruginosa strain PAL1.6 NODE_6_length_242517_cov_21.6234, whole genome shotgun sequence (242517 bp)
Overview 1 RT 1: 93186-98767 bp Neighborhood of RT #1 [93186, 98772] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 93186-93380 bp Feature: gene Location: 93519-93773 bp Feature: domain Description: SdhE Location: 93525-93765 bp Feature: domain Description: SdhE Location: 93525-93765 bp Feature: gene Location: 93849-95168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93852-94428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93852-94 4 28 bp Feature: domain Description: YkfC Location: 94626-94782 bp Feature: domain Description: YkfC Location: 94 626-94 782 bp Feature: domain Description: HNH Note: nucleases Location: 94965-95103 bp Feature: domain Description: HNH Note: nucleases Location: 94 965-95103 bp Feature: gene Location: 96891-97835 bp Feature: domain Description: YgfZ Location: 96900-97800 bp Feature: domain Description: YgfZ Location: 96900-97800 bp Feature: gene Location: 97936-98772 bp Feature: domain Description: HDOD Location: 97939-98767 bp Feature: domain Description: HDOD Location: 97939-98767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)