myRT

myRT report for GCA_013913465.1_ASM1391346v1

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Seq: JACEQR010000017.1 Pseudomonas aeruginosa strain PAL1.5 NODE_17_length_126887_cov_23.8205, whole genome shotgun sequence (126887 bp)
Overview 1 RT 1: 41828-52134 bp 2 RT 2: 68392-77230 bp Neighborhood of RT #1 [41828, 52136] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [68392, 77259] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 41828-42949 bp Feature: domain Description: COG3177 Location: 41846-42938 bp Feature: domain Description: COG31 77 Location: 41 846-42938 bp Feature: gene Location: 43208-43345 bp Feature: gene Location: 43673-45358 bp Feature: domain Description: RVT_N Location: 43730-43970 bp Feature: domain Description: RVT_N Location: 43730-43970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44018-44654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4401 8-44654 bp Feature: domain Description: GIIM Note: maturase Location: 44708-44939 bp Feature: domain Description: GIIM Note: maturase Location: 44708-44939 bp Feature: domain Description: HNH Note: nucleases Location: 45191-45329 bp Feature: domain Description: HNH Note: nucleases Location: 451 91 -45329 bp Feature: gene Location: 46439-50176 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 46547-47204 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 46547-47204 bp Feature: domain Description: PRK09776 Location: 47417-47888 bp Feature: domain Description: PRK09776 Location: 4741 7-47888 bp Feature: domain Description: PAS Location: 47978-48470 bp Feature: domain Description: PAS Location: 47978-48470 bp Feature: domain Description: PRK10060 Location: 48479-50126 bp Feature: domain Description: PRK1 0060 Location: 48479-501 26 bp Feature: gene Location: 50283-52136 bp Feature: domain Description: PRK05658 Location: 50295-52134 bp Feature: domain Description: PRK05658 Location: 50295-521 34 bp Feature: gene Location: 68392-69606 bp Feature: domain Description: PRK10770 Location: 68404-69598 bp Feature: domain Description: PRK1 0770 Location: 68404-69598 bp Feature: gene Location: 69665-72454 bp Feature: domain Description: LptD Location: 69860-72440 bp Feature: domain Description: LptD Location: 69860-72440 bp Feature: gene Location: 72587-74299 bp Feature: domain Description: RVT_N Location: 72644-72887 bp Feature: domain Description: RVT_N Location: 72644-72887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72932-73568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72932-73568 bp Feature: domain Description: YkfC Location: 73778-73928 bp Feature: domain Description: YkfC Location: 73778-73928 bp Feature: domain Description: HNH Note: nucleases Location: 74105-74243 bp Feature: domain Description: HNH Note: nucleases Location: 741 05-74243 bp Feature: gene Location: 75572-76588 bp Feature: domain Description: COG3178 Location: 75575-76574 bp Feature: domain Description: COG31 78 Location: 75575-76574 bp Feature: gene Location: 76585-77259 bp Feature: domain Description: NTP_transferase_like_1 Location: 76591-77230 bp Feature: domain Description: NTP_transferase_like_1 Location: 76591 -77230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)