myRT

myRT report for GCA_013913495.1_ASM1391349v1

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Seq: JACEQT010000017.1 Pseudomonas aeruginosa strain PAL1.3 NODE_17_length_151691_cov_19.0461, whole genome shotgun sequence (151691 bp)
Overview 1 RT 1: 112358-116737 bp Neighborhood of RT #1 [112358, 116737] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 112358-113185 bp Feature: domain Description: ABC_phnC Location: 112388-113102 bp Feature: domain Description: ABC_phnC Location: 1 1 2388-1 1 31 02 bp Feature: gene Location: 113528-114169 bp Feature: domain Description: DUF772 Location: 113678-113873 bp Feature: domain Description: DUF772 Location: 1 1 3678-1 1 3873 bp Feature: gene Location: 114558-115826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114771-115428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4771 -1 1 5428 bp Feature: domain Description: GIIM Note: maturase Location: 115506-115728 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 5506-1 1 5728 bp Feature: gene Location: 115976-116374 bp Feature: gene Location: 116558-116737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JACEQT010000027.1 Pseudomonas aeruginosa strain PAL1.3 NODE_27_length_84731_cov_18.1407, whole genome shotgun sequence (84731 bp)
Overview 1 RT 1: 34485-37144 bp Neighborhood of RT #1 [34485, 37170] RVT-UG17 HipB Feature: gene Location: 34485-35849 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34713-35316 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34713-35316 bp Feature: gene Location: 36378-36803 bp Feature: gene Location: 36889-37170 bp Feature: domain Description: HipB Location: 36910-37144 bp Feature: domain Description: HipB Location: 36910-37144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, HipB (COG1396)

Seq: JACEQT010000006.1 Pseudomonas aeruginosa strain PAL1.3 NODE_6_length_282386_cov_20.1949, whole genome shotgun sequence (282386 bp)
Overview 1 RT 1: 197327-207633 bp 2 RT 2: 223891-232729 bp Neighborhood of RT #1 [197327, 207635] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223891, 232758] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 197327-198448 bp Feature: domain Description: COG3177 Location: 197345-198437 bp Feature: domain Description: COG3 177 Location: 1973 45-19843 7 bp Feature: gene Location: 198707-198844 bp Feature: gene Location: 199172-200857 bp Feature: domain Description: RVT_N Location: 199229-199469 bp Feature: domain Description: RVT_N Location: 199229-199469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199517-200153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199517-200153 bp Feature: domain Description: GIIM Note: maturase Location: 200207-200438 bp Feature: domain Description: GIIM Note: maturase Location: 200207-20043 8 bp Feature: domain Description: HNH Note: nucleases Location: 200690-200828 bp Feature: domain Description: HNH Note: nucleases Location: 200690-200828 bp Feature: gene Location: 201938-205675 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 202046-202703 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 202046-202703 bp Feature: domain Description: PRK09776 Location: 202916-203387 bp Feature: domain Description: PRK09776 Location: 202916-203 3 87 bp Feature: domain Description: PAS Location: 203477-203969 bp Feature: domain Description: PAS Location: 203 477-203 969 bp Feature: domain Description: PRK10060 Location: 203978-205625 bp Feature: domain Description: PRK10060 Location: 203 978-205625 bp Feature: gene Location: 205782-207635 bp Feature: domain Description: PRK05658 Location: 205794-207633 bp Feature: domain Description: PRK05658 Location: 205794-20763 3 bp Feature: gene Location: 223891-225105 bp Feature: domain Description: PRK10770 Location: 223903-225097 bp Feature: domain Description: PRK10770 Location: 223 903 -225097 bp Feature: gene Location: 225164-227953 bp Feature: domain Description: LptD Location: 225359-227939 bp Feature: domain Description: LptD Location: 2253 59-22793 9 bp Feature: gene Location: 228086-229798 bp Feature: domain Description: RVT_N Location: 228143-228386 bp Feature: domain Description: RVT_N Location: 228143 -2283 86 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228431-229067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22843 1-229067 bp Feature: domain Description: YkfC Location: 229277-229427 bp Feature: domain Description: YkfC Location: 229277-229427 bp Feature: domain Description: HNH Note: nucleases Location: 229604-229742 bp Feature: domain Description: HNH Note: nucleases Location: 229604-229742 bp Feature: gene Location: 231071-232087 bp Feature: domain Description: COG3178 Location: 231074-232073 bp Feature: domain Description: COG3 178 Location: 23 1074-23 2073 bp Feature: gene Location: 232084-232758 bp Feature: domain Description: NTP_transferase_like_1 Location: 232090-232729 bp Feature: domain Description: NTP_transferase_like_1 Location: 23 2090-23 2729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)