myRT

myRT report for GCA_013913545.1_ASM1391354v1

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Seq: JACEQU010000023.1 Pseudomonas aeruginosa strain PAL1.2 NODE_23_length_113996_cov_32.1481, whole genome shotgun sequence (113996 bp)
Overview 1 RT 1: 75400-79779 bp Neighborhood of RT #1 [75400, 79779] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 75400-76227 bp Feature: domain Description: ABC_phnC Location: 75430-76144 bp Feature: domain Description: ABC_phnC Location: 75430-761 44 bp Feature: gene Location: 76570-77211 bp Feature: domain Description: DUF772 Location: 76720-76915 bp Feature: domain Description: DUF772 Location: 76720-7691 5 bp Feature: gene Location: 77600-78868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77813-78470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7781 3-78470 bp Feature: domain Description: GIIM Note: maturase Location: 78548-78770 bp Feature: domain Description: GIIM Note: maturase Location: 78548-78770 bp Feature: gene Location: 79018-79416 bp Feature: gene Location: 79600-79779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JACEQU010000008.1 Pseudomonas aeruginosa strain PAL1.2 NODE_8_length_292491_cov_29.0483, whole genome shotgun sequence (292491 bp)
Overview 1 RT 1: 194825-205558 bp 2 RT 2: 221817-230640 bp Neighborhood of RT #1 [194825, 205560] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [221817, 230669] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 194825-195160 bp Feature: domain Description: NERD Location: 194924-195095 bp Feature: domain Description: NERD Location: 19492 4-195095 bp Feature: gene Location: 195253-196374 bp Feature: domain Description: COG3177 Location: 195271-196363 bp Feature: domain Description: COG3177 Location: 1952 71-196363 bp Feature: gene Location: 197097-198782 bp Feature: RT Description: RVT_N Location: 197154-197394 bp Feature: RT Description: RVT_N Location: 197154-197394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197442-198078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197442 -198078 bp Feature: domain Description: GIIM Note: maturase Location: 198132-198363 bp Feature: domain Description: GIIM Note: maturase Location: 198132 -198363 bp Feature: domain Description: HNH Note: nucleases Location: 198615-198753 bp Feature: domain Description: HNH Note: nucleases Location: 198615-198753 bp Feature: gene Location: 199863-203600 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199971-200628 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 199971-2 0062 8 bp Feature: domain Description: PRK09776 Location: 200841-201312 bp Feature: domain Description: PRK09776 Location: 2 00841-2 01312 bp Feature: domain Description: PAS Location: 201357-201894 bp Feature: domain Description: PAS Location: 2 01357-2 01894 bp Feature: domain Description: PRK10060 Location: 201903-203550 bp Feature: domain Description: PRK10060 Location: 2 01903-2 03550 bp Feature: gene Location: 203707-205560 bp Feature: domain Description: PRK05658 Location: 203719-205558 bp Feature: domain Description: PRK05658 Location: 2 03719-2 05558 bp Feature: gene Location: 221817-223031 bp Feature: domain Description: PRK10770 Location: 221829-223023 bp Feature: domain Description: PRK10770 Location: 2 2 182 9-2 2 302 3 bp Feature: gene Location: 223090-225864 bp Feature: domain Description: LptD Location: 223285-225850 bp Feature: domain Description: LptD Location: 2 2 32 85-2 2 5850 bp Feature: gene Location: 225997-227709 bp Feature: RT Description: RVT_N Location: 226054-226297 bp Feature: RT Description: RVT_N Location: 2 2 6054-2 2 62 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226342-226978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 6342 -2 2 6978 bp Feature: domain Description: YkfC Location: 227185-227338 bp Feature: domain Description: YkfC Location: 2 2 7185-2 2 7338 bp Feature: domain Description: HNH Note: nucleases Location: 227515-227653 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 7515-2 2 7653 bp Feature: gene Location: 228982-229998 bp Feature: domain Description: COG3178 Location: 228985-229984 bp Feature: domain Description: COG3178 Location: 2 2 8985-2 2 9984 bp Feature: gene Location: 229995-230669 bp Feature: domain Description: NTP_transferase_like_1 Location: 230001-230640 bp Feature: domain Description: NTP_transferase_like_1 Location: 2 30001-2 30640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)