myRT

myRT report for GCA_014001075.1_ASM1400107v1

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Seq: VCHC01000138.1 Gammaproteobacteria bacterium isolate BAMA_sym bamaSym_150, whole genome shotgun sequence (4449 bp)
Overview 1 RT 1: 947-4041 bp Neighborhood of RT #1 [947, 4310] mnmA ABC_Iron-Siderophores_B12_Hemin ABC_Iron-Siderophores_B12_Hemin RVT-Retrons Feature: gene Location: 947-1936 bp Feature: domain Description: mnmA Location: 953-1925 bp Feature: domain Description: mnmA Location: 953-1 925 bp Feature: gene Location: 2011-3351 bp Feature: domain Description: ABC_Iron-Siderophores_B12_Hemin Location: 2020-2167 bp Feature: domain Description: ABC_Iron-Siderophores_B1 2_Hemin Location: 2020-21 67 bp Feature: domain Description: ABC_Iron-Siderophores_B12_Hemin Location: 2572-2809 bp Feature: domain Description: ABC_Iron-Siderophores_B1 2_Hemin Location: 2572-2809 bp Feature: gene Location: 3348-4310 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3459-4041 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3459-4041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mnmA (PRK14665), ABC_Iron-Siderophores_B12_Hemin (cd03214), RVT-Retrons

Seq: VCHC01000241.1 Gammaproteobacteria bacterium isolate BAMA_sym bamaSym_268, whole genome shotgun sequence (1275 bp)
Overview 1 RT 1: 173-527 bp Neighborhood of RT #1 [173, 1234] RVT-CRISPR-like Feature: gene Location: 173-1234 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 272-527 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 72 -52 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VCHC01000487.1 Gammaproteobacteria bacterium isolate BAMA_sym bamaSym_538, whole genome shotgun sequence (3932 bp)
Overview 1 RT 1: 1-3511 bp Neighborhood of RT #1 [1, 3549] Cas_csx3 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 1-231 bp Feature: domain Description: Cas_csx3 Location: 58-214 bp Feature: domain Description: Cas_csx3 Location: 58-214 bp Feature: gene Location: 419-3271 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1475-2069 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1475-2069 bp Feature: domain Description: Cas1_I-II-III Location: 2300-3230 bp Feature: domain Description: Cas1_I-II-III Location: 23 00-3 23 0 bp Feature: gene Location: 3268-3549 bp Feature: domain Description: Cas2_I_II_III Location: 3280-3511 bp Feature: domain Description: Cas2_I_II_III Location: 3 280-3 511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_csx3 (pfam09620), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: VCHC01000084.1 Gammaproteobacteria bacterium isolate BAMA_sym bamaSym_89, whole genome shotgun sequence (5378 bp)
Overview 1 RT 1: 9-4903 bp Neighborhood of RT #1 [9, 5376] RVT-CRISPR Cas_Cas1 TIGR03986 Feature: gene Location: 9-2957 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1164-1767 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1164 -1767 bp Feature: domain Description: Cas_Cas1 Location: 1983-2823 bp Feature: domain Description: Cas_Cas1 Location: 1983-2823 bp Feature: gene Location: 3193-3585 bp Feature: gene Location: 3598-5376 bp Feature: domain Description: TIGR03986 Location: 3604-4903 bp Feature: domain Description: TIGR03986 Location: 3604 -4 903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867), TIGR03986 (CRISPR-associated protein)