myRT

myRT report for GCA_014040775.1_ASM1404077v1

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Seq: JACEUZ010000006.1 Pseudomonas aeruginosa strain PAL1.59 NODE_6_length_292494_cov_26.7523, whole genome shotgun sequence (292494 bp)
Overview 1 RT 1: 194829-205562 bp 2 RT 2: 221821-230643 bp Neighborhood of RT #1 [194829, 205564] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [221821, 230672] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 194829-195164 bp Feature: domain Description: NERD Location: 194928-195099 bp Feature: domain Description: NERD Location: 1 94928-1 95099 bp Feature: gene Location: 195257-196378 bp Feature: domain Description: COG3177 Location: 195275-196367 bp Feature: domain Description: COG31 77 Location: 1 95275-1 96367 bp Feature: gene Location: 197101-198786 bp Feature: RT Description: RVT_N Location: 197158-197398 bp Feature: RT Description: RVT_N Location: 1 971 58-1 97398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197446-198082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97446-1 98082 bp Feature: domain Description: GIIM Note: maturase Location: 198136-198367 bp Feature: domain Description: GIIM Note: maturase Location: 1 981 36-1 98367 bp Feature: domain Description: HNH Note: nucleases Location: 198619-198757 bp Feature: domain Description: HNH Note: nucleases Location: 1 9861 9-1 98757 bp Feature: gene Location: 199867-203604 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199975-200632 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 99975-200632 bp Feature: domain Description: PRK09776 Location: 200845-201316 bp Feature: domain Description: PRK09776 Location: 200845-201 31 6 bp Feature: domain Description: PAS Location: 201361-201898 bp Feature: domain Description: PAS Location: 201 361 -201 898 bp Feature: domain Description: PRK10060 Location: 201907-203554 bp Feature: domain Description: PRK1 0060 Location: 201 907-203554 bp Feature: gene Location: 203711-205564 bp Feature: domain Description: PRK05658 Location: 203723-205562 bp Feature: domain Description: PRK05658 Location: 203723-205562 bp Feature: gene Location: 221821-223035 bp Feature: domain Description: PRK10770 Location: 221833-223027 bp Feature: domain Description: PRK1 0770 Location: 221 833-223027 bp Feature: gene Location: 223094-225868 bp Feature: domain Description: LptD Location: 223289-225854 bp Feature: domain Description: LptD Location: 223289-225854 bp Feature: gene Location: 226001-227713 bp Feature: RT Description: RVT_N Location: 226058-226301 bp Feature: RT Description: RVT_N Location: 226058-226301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226346-226982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226346-226982 bp Feature: domain Description: YkfC Location: 227192-227342 bp Feature: domain Description: YkfC Location: 2271 92-227342 bp Feature: domain Description: HNH Note: nucleases Location: 227519-227657 bp Feature: domain Description: HNH Note: nucleases Location: 22751 9-227657 bp Feature: gene Location: 228985-230001 bp Feature: domain Description: COG3178 Location: 228988-229987 bp Feature: domain Description: COG31 78 Location: 228988-229987 bp Feature: gene Location: 229998-230672 bp Feature: domain Description: NTP_transferase_like_1 Location: 230004-230643 bp Feature: domain Description: NTP_transferase_like_1 Location: 230004-230643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)