myRT

myRT report for GCA_014040885.1_ASM1404088v1

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Seq: JACEVD010000003.1 Pseudomonas aeruginosa strain PAL1.16 NODE_3_length_289515_cov_29.8415, whole genome shotgun sequence (289515 bp)
Overview 1 RT 1: 194840-205573 bp Neighborhood of RT #1 [194840, 205575] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 194840-195175 bp Feature: domain Description: NERD Location: 194939-195110 bp Feature: domain Description: NERD Location: 1 94939-1 951 1 0 bp Feature: gene Location: 195268-196389 bp Feature: domain Description: COG3177 Location: 195286-196378 bp Feature: domain Description: COG31 77 Location: 1 95286-1 96378 bp Feature: gene Location: 197112-198797 bp Feature: RT Description: RVT_N Location: 197169-197409 bp Feature: RT Description: RVT_N Location: 1 971 69-1 97409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197457-198093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97457-1 98093 bp Feature: domain Description: GIIM Note: maturase Location: 198147-198378 bp Feature: domain Description: GIIM Note: maturase Location: 1 981 47-1 98378 bp Feature: domain Description: HNH Note: nucleases Location: 198630-198768 bp Feature: domain Description: HNH Note: nucleases Location: 1 98630-1 98768 bp Feature: gene Location: 199878-203615 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199986-200643 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 99986-200643 bp Feature: domain Description: PRK09776 Location: 200856-201327 bp Feature: domain Description: PRK09776 Location: 200856-201 327 bp Feature: domain Description: PAS Location: 201372-201909 bp Feature: domain Description: PAS Location: 201 372-201 909 bp Feature: domain Description: PRK10060 Location: 201918-203565 bp Feature: domain Description: PRK1 0060 Location: 201 91 8-203565 bp Feature: gene Location: 203722-205575 bp Feature: domain Description: PRK05658 Location: 203734-205573 bp Feature: domain Description: PRK05658 Location: 203734-205573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)