myRT

myRT report for GCA_014042455.1_ASM1404245v1

Download annotations/find similar RTs

Seq: JACFSV010000017.1 Bacteroides fragilis strain BFR_KZ09 NODE_17_length_119410_cov_19.809168, whole genome shotgun sequence (119410 bp)
Overview 1 RT 1: 58738-63658 bp Neighborhood of RT #1 [58738, 63798] TraG_VirD4 VirD4 RVT_N RVT-GII GIIM Peptidase_A22B Feature: gene Location: 58738-58974 bp Feature: gene Location: 59103-60806 bp Feature: domain Description: TraG_VirD4 Location: 59328-59688 bp Feature: domain Description: TraG_VirD4 Location: 59328-59688 bp Feature: domain Description: VirD4 Location: 59859-60384 bp Feature: domain Description: VirD4 Location: 59859-60384 bp Feature: gene Location: 60803-62458 bp Feature: domain Description: RVT_N Location: 60857-61100 bp Feature: domain Description: RVT_N Location: 60857-61 1 00 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61145-61790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 45-61 790 bp Feature: domain Description: GIIM Note: maturase Location: 61841-62075 bp Feature: domain Description: GIIM Note: maturase Location: 61 841 -62075 bp Feature: gene Location: 62532-62849 bp Feature: gene Location: 63079-63798 bp Feature: domain Description: Peptidase_A22B Location: 63310-63658 bp Feature: domain Description: Peptidase_A22B Location: 6331 0-63658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Peptidase_A22B (pfam04258)

Seq: JACFSV010000002.1 Bacteroides fragilis strain BFR_KZ09 NODE_2_length_452758_cov_20.989755, whole genome shotgun sequence (452758 bp)
Overview 1 RT 1: 104471-113430 bp Neighborhood of RT #1 [104471, 113438] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 104471-106660 bp Feature: domain Description: GlnA3 Location: 104546-106658 bp Feature: domain Description: GlnA3 Location: 104546-106658 bp Feature: gene Location: 106900-109119 bp Feature: gene Location: 109326-110438 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109641-110190 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109641-110190 bp Feature: gene Location: 110580-112373 bp Feature: domain Description: rpsA Location: 110658-112266 bp Feature: domain Description: rpsA Location: 110658-112 2 66 bp Feature: gene Location: 112524-113438 bp Feature: domain Description: RNase_Z Location: 112539-113430 bp Feature: domain Description: RNase_Z Location: 112 539-113430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JACFSV010000008.1 Bacteroides fragilis strain BFR_KZ09 NODE_8_length_239558_cov_19.436155, whole genome shotgun sequence (239558 bp)
Overview 1 RT 1: 104912-110535 bp Neighborhood of RT #1 [104912, 110535] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 104912-105322 bp Feature: domain Description: Cas_Cmr5 Location: 104960-105206 bp Feature: domain Description: Cas_Cmr5 Location: 104960-105206 bp Feature: gene Location: 105319-106269 bp Feature: domain Description: Cmr6_III-B Location: 105481-106258 bp Feature: domain Description: Cmr6_III-B Location: 105481-106258 bp Feature: gene Location: 106289-108559 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 106496-107102 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 106496-107102 bp Feature: domain Description: Cas1_I-II-III Location: 107561-108518 bp Feature: domain Description: Cas1_I-II-III Location: 107561-108518 bp Feature: gene Location: 108553-108843 bp Feature: domain Description: Cas2_I_II_III Location: 108580-108790 bp Feature: domain Description: Cas2_I_II_III Location: 108580-108790 bp Feature: gene Location: 110368-110535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)