myRT

myRT report for GCA_014042465.1_ASM1404246v1

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Seq: JACFSW010000005.1 Bacteroides fragilis strain BFR_KZ10 NODE_5_length_402982_cov_21.943223, whole genome shotgun sequence (402982 bp)
Overview 1 RT 1: 325720-331446 bp 2 RT 2: 363129-369709 bp Neighborhood of RT #1 [325720, 331490] DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #2 [363129, 369768] HTH_17 RVT-GII Intron_maturas2 Beta_helix Beta_helix Feature: gene Location: 325720-326100 bp Feature: domain Description: DUF3876 Location: 325801-326065 bp Feature: domain Description: DUF3876 Location: 325801 -326065 bp Feature: gene Location: 326088-326276 bp Feature: gene Location: 326371-328194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326635-327457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326635-327457 bp Feature: domain Description: Intron_maturas2 Location: 327631-327874 bp Feature: domain Description: Intron_maturas2 Location: 327631 -327874 bp Feature: domain Description: HNHc Note: nucleases Location: 327985-328156 bp Feature: domain Description: HNHc Note: nucleases Location: 327985-3281 56 bp Feature: gene Location: 328762-331161 bp Feature: domain Description: Bac_Flav_CT_G Location: 328765-331153 bp Feature: domain Description: Bac_Flav_CT_G Location: 328765-331 1 53 bp Feature: gene Location: 331158-331490 bp Feature: domain Description: DUF4133 Location: 331176-331446 bp Feature: domain Description: DUF41 33 Location: 331 1 76-331 446 bp Feature: gene Location: 363129-363434 bp Feature: domain Description: HTH_17 Location: 363267-363414 bp Feature: domain Description: HTH_1 7 Location: 363267-36341 4 bp Feature: gene Location: 363514-363876 bp Feature: gene Location: 364090-365898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364354-365176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364354-3651 76 bp Feature: domain Description: Intron_maturas2 Location: 365299-365554 bp Feature: domain Description: Intron_maturas2 Location: 365299-365554 bp Feature: gene Location: 366431-367603 bp Feature: gene Location: 367981-369768 bp Feature: domain Description: Beta_helix Location: 369229-369487 bp Feature: domain Description: Beta_helix Location: 369229-369487 bp Feature: domain Description: Beta_helix Location: 369583-369709 bp Feature: domain Description: Beta_helix Location: 369583-369709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571), HTH_17 (pfam12728), Beta_helix (pfam13229)

Seq: JACFSW010000006.1 Bacteroides fragilis strain BFR_KZ10 NODE_6_length_397964_cov_23.745273, whole genome shotgun sequence (397964 bp)
Overview 1 RT 1: 129722-131738 bp Neighborhood of RT #1 [129722, 131738] RVT-GII HTH_28 Feature: gene Location: 129722-130084 bp Feature: gene Location: 130088-130297 bp Feature: gene Location: 130327-130524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130330-130522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130330-13052 2 bp Feature: gene Location: 130645-130935 bp Feature: domain Description: HTH_28 Location: 130675-130816 bp Feature: domain Description: HTH_2 8 Location: 130675-130816 bp Feature: gene Location: 131364-131738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: JACFSW010000008.1 Bacteroides fragilis strain BFR_KZ10 NODE_8_length_326103_cov_24.557998, whole genome shotgun sequence (326103 bp)
Overview 1 RT 1: 208022-216986 bp Neighborhood of RT #1 [208022, 216988] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 208022-208936 bp Feature: domain Description: RNase_Z Location: 208037-208928 bp Feature: domain Description: RNase_Z Location: 20803 7-208928 bp Feature: gene Location: 209086-210879 bp Feature: domain Description: rpsA Location: 209164-210772 bp Feature: domain Description: rpsA Location: 209164-210772 bp Feature: gene Location: 211021-212133 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 211336-211885 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2113 3 6-211885 bp Feature: gene Location: 212340-214559 bp Feature: gene Location: 214799-216988 bp Feature: domain Description: GlnA3 Location: 214871-216986 bp Feature: domain Description: GlnA3 Location: 214871-216986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)