myRT

myRT report for GCA_014042525.1_ASM1404252v1

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Seq: JACFST010000010.1 Bacteroides fragilis strain BFR_KZ07 NODE_10_length_220777_cov_16.706621, whole genome shotgun sequence (220777 bp)
Overview 1 RT 1: 6623-11896 bp Neighborhood of RT #1 [6623, 11922] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 6623-8653 bp Feature: domain Description: Bac_Flav_CT_G Location: 6626-8648 bp Feature: domain Description: Bac_Flav_CT_G Location: 6626-8648 bp Feature: gene Location: 8846-9052 bp Feature: gene Location: 9232-10932 bp Feature: RT Description: RVT_N Location: 9331-9574 bp Feature: RT Description: RVT_N Location: 9331 -9574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9619-10267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 961 9-1 0267 bp Feature: domain Description: GIIM Note: maturase Location: 10318-10552 bp Feature: domain Description: GIIM Note: maturase Location: 1 031 8-1 0552 bp Feature: gene Location: 10935-11525 bp Feature: domain Description: Bac_Flav_CT_G Location: 11049-11508 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 049-1 1 508 bp Feature: gene Location: 11548-11922 bp Feature: domain Description: DUF3876 Location: 11626-11896 bp Feature: domain Description: DUF3876 Location: 1 1 626-1 1 896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JACFST010000011.1 Bacteroides fragilis strain BFR_KZ07 NODE_11_length_205270_cov_17.466284, whole genome shotgun sequence (205270 bp)
Overview 1 RT 1: 182561-194047 bp Neighborhood of RT #1 [182561, 194127] N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 HepA RVT_N RVT-GII GIIM mpi Feature: gene Location: 182561-185665 bp Feature: domain Description: N6_Mtase Location: 182873-183524 bp Feature: domain Description: N6_Mtase Location: 182 873-18352 4 bp Feature: domain Description: COG4646 Location: 184787-185654 bp Feature: domain Description: COG4646 Location: 184787-185654 bp Feature: gene Location: 185843-186136 bp Feature: gene Location: 186217-188019 bp Feature: domain Description: matK Location: 186286-186445 bp Feature: domain Description: matK Location: 1862 86-186445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186481-187303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186481-187303 bp Feature: domain Description: Intron_maturas2 Location: 187462-187687 bp Feature: domain Description: Intron_maturas2 Location: 187462 -187687 bp Feature: gene Location: 188006-189640 bp Feature: domain Description: COG4646 Location: 188120-189260 bp Feature: domain Description: COG4646 Location: 18812 0-1892 60 bp Feature: domain Description: HepA Location: 189488-189623 bp Feature: domain Description: HepA Location: 189488-18962 3 bp Feature: gene Location: 190297-191964 bp Feature: RT Description: RVT_N Location: 190351-190594 bp Feature: RT Description: RVT_N Location: 190351-190594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190639-191287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190639-1912 87 bp Feature: domain Description: GIIM Note: maturase Location: 191341-191572 bp Feature: domain Description: GIIM Note: maturase Location: 191341-191572 bp Feature: gene Location: 191918-193255 bp Feature: gene Location: 193372-194127 bp Feature: domain Description: mpi Location: 193474-194047 bp Feature: domain Description: mpi Location: 193474-194047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), HepA (COG0553), RVT_N (pfam13655), GIIM (pfam08388), mpi (PRK13413)

Seq: JACFST010000001.1 Bacteroides fragilis strain BFR_KZ07 NODE_1_length_644423_cov_16.552971, whole genome shotgun sequence (644423 bp)
Overview 1 RT 1: 470093-479052 bp Neighborhood of RT #1 [470093, 479060] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 470093-472282 bp Feature: domain Description: GlnA3 Location: 470168-472280 bp Feature: domain Description: GlnA3 Location: 470168-472280 bp Feature: gene Location: 472523-474742 bp Feature: gene Location: 474949-476061 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 475264-475813 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 475264-475813 bp Feature: gene Location: 476203-477996 bp Feature: domain Description: rpsA Location: 476281-477889 bp Feature: domain Description: rpsA Location: 476281-477889 bp Feature: gene Location: 478146-479060 bp Feature: domain Description: RNase_Z Location: 478161-479052 bp Feature: domain Description: RNase_Z Location: 478161-479052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JACFST010000025.1 Bacteroides fragilis strain BFR_KZ07 NODE_25_length_2419_cov_36.625654, whole genome shotgun sequence (2419 bp)
Overview 1 RT 1: 122-2240 bp Neighborhood of RT #1 [122, 2240] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: RT Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT_N Location: 176-4 19 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 64 -1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: gene Location: 2091-2240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)