myRT

myRT report for GCA_014042565.1_ASM1404256v1

Download annotations/find similar RTs

Seq: JACFTX010000017.1 Photobacterium damselae subsp. damselae strain 125dy-OG11 NODE_17_length_94986_cov_28.749391, whole genome shotgun sequence (94986 bp)
Overview 1 RT 1: 79757-86085 bp Neighborhood of RT #1 [79757, 86123] N6_Mtase DUF3387 RVT-GII GIIM TniQ Csy2_I-F Feature: gene Location: 79757-80152 bp Feature: domain Description: N6_Mtase Location: 79760-80081 bp Feature: domain Description: N6_Mtase Location: 79760-80081 bp Feature: gene Location: 80366-80695 bp Feature: domain Description: DUF3387 Location: 80378-80657 bp Feature: domain Description: DUF3387 Location: 80378-80657 bp Feature: gene Location: 81427-82740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81646-82261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 646-82261 bp Feature: domain Description: GIIM Note: maturase Location: 82312-82522 bp Feature: domain Description: GIIM Note: maturase Location: 8231 2-82522 bp Feature: gene Location: 82856-84064 bp Feature: domain Description: TniQ Location: 82892-83330 bp Feature: domain Description: TniQ Location: 82892-83330 bp Feature: gene Location: 84069-86123 bp Feature: domain Description: Csy2_I-F Location: 85344-86085 bp Feature: domain Description: Csy2_I-F Location: 85344-86085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), DUF3387 (pfam11867), RVT-GII, GIIM (pfam08388), TniQ (pfam06527), Csy2_I-F (cl12127)

Seq: JACFTX010000002.1 Photobacterium damselae subsp. damselae strain 125dy-OG11 NODE_2_length_277184_cov_26.331455, whole genome shotgun sequence (277184 bp)
Overview 1 RT 1: 183186-187663 bp Neighborhood of RT #1 [183186, 187663] YjjU YjjU RVT-Retrons Feature: gene Location: 183186-184409 bp Feature: domain Description: YjjU Location: 183270-183933 bp Feature: domain Description: YjjU Location: 1832 70-183933 bp Feature: domain Description: YjjU Location: 184134-184377 bp Feature: domain Description: YjjU Location: 184134-184377 bp Feature: gene Location: 184833-184973 bp Feature: gene Location: 185048-186229 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 185300-185954 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 185300-185954 bp Feature: gene Location: 186236-186373 bp Feature: gene Location: 186401-187663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjjU (COG4667), RVT-Retrons

Seq: JACFTX010000004.1 Photobacterium damselae subsp. damselae strain 125dy-OG11 NODE_4_length_236190_cov_28.033422, whole genome shotgun sequence (236190 bp)
Overview 1 RT 1: 56302-62368 bp Neighborhood of RT #1 [56302, 62382] Atl1 RVT-UG5 HTH_XRE 2TM Feature: gene Location: 56302-56607 bp Feature: domain Description: Atl1 Location: 56305-56599 bp Feature: domain Description: Atl1 Location: 563 05-56599 bp Feature: gene Location: 56719-57456 bp Feature: gene Location: 57920-61132 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 58451-58952 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 58451-58952 bp Feature: gene Location: 61149-61601 bp Feature: gene Location: 61915-62382 bp Feature: domain Description: HTH_XRE Location: 61921-62083 bp Feature: domain Description: HTH_XRE Location: 61921-62083 bp Feature: domain Description: 2TM Location: 62149-62368 bp Feature: domain Description: 2TM Location: 62149-623 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Atl1 (COG3695), RVT-UG5, HTH_XRE (smart00530), 2TM (pfam13239)