myRT

myRT report for GCA_014057865.1_ASM1405786v1

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Seq: JACBKG010000019.1 Vibrio parahaemolyticus strain VP365 Scaffold19_1, whole genome shotgun sequence (37945 bp)
Overview 1 RT 1: 24319-32139 bp Neighborhood of RT #1 [24319, 32204] COG3547 RVT_N RVT-GII GIIM AcrB RND_mfp RND_mfp Feature: gene Location: 24319-24492 bp Feature: gene Location: 24591-25610 bp Feature: domain Description: COG3547 Location: 24612-25578 bp Feature: domain Description: COG3547 Location: 2461 2-25578 bp Feature: gene Location: 25898-27370 bp Feature: RT Description: RVT_N Location: 25946-26189 bp Feature: RT Description: RVT_N Location: 25946-261 89 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26234-26861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26234-26861 bp Feature: domain Description: GIIM Note: maturase Location: 26921-27146 bp Feature: domain Description: GIIM Note: maturase Location: 26921 -271 46 bp Feature: gene Location: 27790-30891 bp Feature: domain Description: AcrB Location: 27793-30856 bp Feature: domain Description: AcrB Location: 27793-30856 bp Feature: gene Location: 30888-32204 bp Feature: domain Description: RND_mfp Location: 31065-31278 bp Feature: domain Description: RND_mfp Location: 31 065-31 278 bp Feature: domain Description: RND_mfp Location: 31470-32139 bp Feature: domain Description: RND_mfp Location: 31 470-321 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AcrB (COG0841), RND_mfp (TIGR01730)

Seq: JACBKG010000004.1 Vibrio parahaemolyticus strain VP365 Scaffold4_1, whole genome shotgun sequence (484447 bp)
Overview 1 RT 1: 145227-150548 bp Neighborhood of RT #1 [145227, 150550] PinE RVT-Retrons Tar Feature: gene Location: 145227-145835 bp Feature: domain Description: PinE Location: 145239-145812 bp Feature: domain Description: PinE Location: 1452 39-145812 bp Feature: gene Location: 146068-146787 bp Feature: gene Location: 146797-147951 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 146893-147478 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 146893-147478 bp Feature: gene Location: 148396-148557 bp Feature: gene Location: 148913-150550 bp Feature: domain Description: Tar Location: 149369-150548 bp Feature: domain Description: Tar Location: 149369-150548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-Retrons, Tar (COG0840)