myRT

myRT report for GCA_014062205.1_ASM1406220v1

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Seq: JACGDG010000001.1 Pseudomonas putida strain 12464 isolate PP7 NODE_1_length_467500_cov_56.513318, whole genome shotgun sequence (467500 bp)
Overview 1 RT 1: 273946-282157 bp Neighborhood of RT #1 [273946, 282207] PilN PilM RVT_N RVT-GII GIIM HNH MrcA PRK07232 Feature: gene Location: 273946-274482 bp Feature: domain Description: PilN Location: 273952-274462 bp Feature: domain Description: PilN Location: 273952-274462 bp Feature: gene Location: 274482-275339 bp Feature: domain Description: PilM Location: 274485-275019 bp Feature: domain Description: PilM Location: 274485-27501 9 bp Feature: gene Location: 276525-278231 bp Feature: RT Description: RVT_N Location: 276582-276825 bp Feature: RT Description: RVT_N Location: 276582-276825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276870-277506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276870-277506 bp Feature: domain Description: GIIM Note: maturase Location: 277557-277791 bp Feature: domain Description: GIIM Note: maturase Location: 277557-277791 bp Feature: domain Description: HNH Note: nucleases Location: 278043-278181 bp Feature: domain Description: HNH Note: nucleases Location: 278043-2781 81 bp Feature: gene Location: 278285-280813 bp Feature: domain Description: MrcA Location: 278366-280739 bp Feature: domain Description: MrcA Location: 278366-280739 bp Feature: gene Location: 280930-282207 bp Feature: domain Description: PRK07232 Location: 280948-282157 bp Feature: domain Description: PRK07232 Location: 280948-2821 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilN (pfam05137), PilM (pfam07419), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), MrcA (COG5009), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed)

Seq: JACGDG010000020.1 Pseudomonas putida strain 12464 isolate PP7 NODE_20_length_137617_cov_60.274449, whole genome shotgun sequence (137617 bp)
Overview 1 RT 1: 90160-96385 bp Neighborhood of RT #1 [90160, 96402] PRK10634 Smf RVT_N RVT-GII YkfC HNH def fmt Feature: gene Location: 90160-90717 bp Feature: domain Description: PRK10634 Location: 90181-90715 bp Feature: domain Description: PRK10634 Location: 90181-90715 bp Feature: gene Location: 90756-91853 bp Feature: domain Description: Smf Location: 90795-91845 bp Feature: domain Description: Smf Location: 90795-91845 bp Feature: gene Location: 93089-94795 bp Feature: RT Description: RVT_N Location: 93146-93389 bp Feature: RT Description: RVT_N Location: 93146-93389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93434-94067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93434-94067 bp Feature: domain Description: YkfC Location: 94268-94430 bp Feature: domain Description: YkfC Location: 942 68-94430 bp Feature: domain Description: HNH Note: nucleases Location: 94607-94745 bp Feature: domain Description: HNH Note: nucleases Location: 94607-94745 bp Feature: gene Location: 94903-95409 bp Feature: domain Description: def Location: 94906-95392 bp Feature: domain Description: def Location: 94906-95392 bp Feature: gene Location: 95470-96402 bp Feature: domain Description: fmt Location: 95473-96385 bp Feature: domain Description: fmt Location: 95473-96385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10634 (L-threonylcarbamoyladenylate synthase type 1 TsaC), Smf (COG0758), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), def (PRK00150), fmt (TIGR00460)

Seq: JACGDG010000029.1 Pseudomonas putida strain 12464 isolate PP7 NODE_29_length_44872_cov_39.840474, whole genome shotgun sequence (44872 bp)
Overview 1 RT 1: 215-3794 bp Neighborhood of RT #1 [215, 3794] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 215-787 bp Feature: domain Description: DUF1566 Location: 548-773 bp Feature: domain Description: DUF1566 Location: 548-773 bp Feature: gene Location: 840-1193 bp Feature: domain Description: Avd_like Location: 867-1173 bp Feature: domain Description: Avd_like Location: 867-1173 bp Feature: gene Location: 1392-2549 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1641-2325 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1641-23 25 bp Feature: gene Location: 2593-3366 bp Feature: gene Location: 3381-3794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF1566 (pfam07603), Avd_like (cd16376)

Seq: JACGDG010000034.1 Pseudomonas putida strain 12464 isolate PP7 NODE_34_length_37969_cov_63.682892, whole genome shotgun sequence (37969 bp)
Overview 1 RT 1: 34821-37831 bp Neighborhood of RT #1 [34821, 37914] IS285 DUF772 RVT-GII GIIM Feature: gene Location: 34821-35240 bp Feature: domain Description: IS285 Location: 34872-35097 bp Feature: domain Description: IS285 Location: 34 872-35097 bp Feature: gene Location: 35625-35855 bp Feature: domain Description: DUF772 Location: 35775-35853 bp Feature: domain Description: DUF772 Location: 35775-35853 bp Feature: gene Location: 36661-37914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36874-37531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36874 -37531 bp Feature: domain Description: GIIM Note: maturase Location: 37609-37831 bp Feature: domain Description: GIIM Note: maturase Location: 37609-37831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)