myRT

myRT report for GCA_014062225.1_ASM1406222v1

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Seq: JACGDB010000010.1 Pseudomonas monteilii strain 10963 NODE_10_length_240045_cov_48.084000, whole genome shotgun sequence (240045 bp)
Overview 1 RT 1: 146363-152606 bp Neighborhood of RT #1 [146363, 152608] fmt def RVT_N RVT-GII YkfC HNH Smf SUA5 Feature: gene Location: 146363-147295 bp Feature: domain Description: fmt Location: 146366-147278 bp Feature: domain Description: fmt Location: 1 46366-1 47278 bp Feature: gene Location: 147355-147861 bp Feature: domain Description: def Location: 147358-147844 bp Feature: domain Description: def Location: 1 47358-1 47844 bp Feature: gene Location: 147969-149675 bp Feature: RT Description: RVT_N Location: 148026-148269 bp Feature: RT Description: RVT_N Location: 1 48026-1 48269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148314-148947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4831 4-1 48947 bp Feature: domain Description: YkfC Location: 149148-149310 bp Feature: domain Description: YkfC Location: 1 491 48-1 4931 0 bp Feature: domain Description: HNH Note: nucleases Location: 149487-149625 bp Feature: domain Description: HNH Note: nucleases Location: 1 49487-1 49625 bp Feature: gene Location: 150911-152008 bp Feature: domain Description: Smf Location: 150947-152000 bp Feature: domain Description: Smf Location: 1 50947-1 52000 bp Feature: gene Location: 152051-152608 bp Feature: domain Description: SUA5 Location: 152069-152606 bp Feature: domain Description: SUA5 Location: 1 52069-1 52606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fmt (TIGR00460), def (PRK00150), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), Smf (COG0758), SUA5 (pfam03481)

Seq: JACGDB010000002.1 Pseudomonas monteilii strain 10963 NODE_2_length_628177_cov_34.610135, whole genome shotgun sequence (628177 bp)
Overview 1 RT 1: 373391-377198 bp 2 RT 2: 391835-401151 bp Neighborhood of RT #1 [373391, 377503] RVT-GII TnpB_IS66 AcrR Neighborhood of RT #2 [391835, 401207] PRK05478 PDR_like RVT-GII InsE TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 373391-373816 bp Feature: gene Location: 374025-374378 bp Feature: gene Location: 375295-375597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375499-375586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375499-375586 bp Feature: gene Location: 376003-376353 bp Feature: domain Description: TnpB_IS66 Location: 376075-376228 bp Feature: domain Description: TnpB_IS66 Location: 376075-3762 2 8 bp Feature: gene Location: 376802-377503 bp Feature: domain Description: AcrR Location: 376928-377198 bp Feature: domain Description: AcrR Location: 37692 8-377198 bp Feature: gene Location: 391835-393235 bp Feature: domain Description: PRK05478 Location: 391838-393230 bp Feature: domain Description: PRK05478 Location: 391838-3932 30 bp Feature: gene Location: 393415-394287 bp Feature: domain Description: PDR_like Location: 393547-394150 bp Feature: domain Description: PDR_like Location: 393547-394150 bp Feature: gene Location: 394497-395567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395181-395562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395181-395562 bp Feature: gene Location: 395753-396073 bp Feature: domain Description: InsE Location: 395759-395960 bp Feature: domain Description: InsE Location: 395759-395960 bp Feature: gene Location: 396070-396405 bp Feature: domain Description: TnpB_IS66 Location: 396088-396376 bp Feature: domain Description: TnpB_IS66 Location: 396088-396376 bp Feature: gene Location: 396469-397806 bp Feature: domain Description: LZ_Tnp_IS66 Location: 396610-396823 bp Feature: domain Description: LZ_Tnp_IS66 Location: 396610-39682 3 bp Feature: domain Description: zf-IS66 Location: 396844-396970 bp Feature: domain Description: zf-IS66 Location: 396844-396970 bp Feature: domain Description: DDE_Tnp_IS66 Location: 397012-397786 bp Feature: domain Description: DDE_Tnp_IS66 Location: 397012 -397786 bp Feature: gene Location: 398362-399960 bp Feature: RT Description: RVT_N Location: 398407-398650 bp Feature: RT Description: RVT_N Location: 398407-398650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398695-399331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398695-399331 bp Feature: domain Description: GIIM Note: maturase Location: 399385-399616 bp Feature: domain Description: GIIM Note: maturase Location: 399385-399616 bp Feature: gene Location: 400044-400241 bp Feature: gene Location: 400308-401207 bp Feature: domain Description: DDE_Tnp_1 Location: 400473-401151 bp Feature: domain Description: DDE_Tnp_1 Location: 400473-401151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TnpB_IS66 (pfam05717), AcrR (COG1309), PRK05478 (3-isopropylmalate dehydratase large subunit), PDR_like (cd06185), InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655)
GIIM (pfam08388), DDE_Tnp_1 (pfam01609)