myRT

myRT report for GCA_014076785.1_ASM1407678v1

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Seq: JACGUS010000106.1 Colwellia sp. MB3u-55 NODE_909644_length_118565_cov_24.4, whole genome shotgun sequence (118565 bp)
Overview 1 RT 1: 3701-8079 bp Neighborhood of RT #1 [3701, 8186] Mob_Pre RVT-UG4 CTX_RstB Feature: gene Location: 3701-4009 bp Feature: gene Location: 4129-4944 bp Feature: domain Description: Mob_Pre Location: 4180-4756 bp Feature: domain Description: Mob_Pre Location: 41 80-4756 bp Feature: gene Location: 5450-6460 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5789-6239 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5789-6239 bp Feature: gene Location: 7636-7857 bp Feature: gene Location: 7911-8186 bp Feature: domain Description: CTX_RstB Location: 7923-8079 bp Feature: domain Description: CTX_RstB Location: 7923-8079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), RVT-UG4, CTX_RstB (pfam07459)

Seq: JACGUS010000116.1 Colwellia sp. MB3u-55 NODE_909678_length_305005_cov_25.5, whole genome shotgun sequence (305005 bp)
Overview 1 RT 1: 19935-27223 bp Neighborhood of RT #1 [19935, 27273] PRK10919 RVT-UG4 PEP-CTERM COG3666 DDE_Tnp_1_6 Feature: gene Location: 19935-21956 bp Feature: domain Description: PRK10919 Location: 19938-21951 bp Feature: domain Description: PRK10919 Location: 19938-2 1951 bp Feature: gene Location: 22178-22555 bp Feature: gene Location: 23071-23991 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 23410-23860 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 3410-2 3860 bp Feature: gene Location: 24055-24960 bp Feature: domain Description: PEP-CTERM Location: 24880-24943 bp Feature: domain Description: PEP-CTERM Location: 2 4880-2 4943 bp Feature: gene Location: 25837-27273 bp Feature: domain Description: COG3666 Location: 25849-26305 bp Feature: domain Description: COG3666 Location: 2 5849-2 6305 bp Feature: domain Description: DDE_Tnp_1_6 Location: 26869-27223 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2 6869-2 72 2 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10919 (ATP-dependent DNA helicase Rep; Provisional), RVT-UG4, PEP-CTERM, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: JACGUS010000120.1 Colwellia sp. MB3u-55 NODE_909700_length_130045_cov_25.3, whole genome shotgun sequence (130045 bp)
Overview 1 RT 1: 121576-126181 bp Neighborhood of RT #1 [121576, 126181] TIGR00368 Ser_Recombinase Recombinase Zn_ribbon_recom RVT-Retrons HTH_XRE Feature: gene Location: 121576-122832 bp Feature: domain Description: TIGR00368 Location: 121582-122785 bp Feature: domain Description: TIGR003 68 Location: 121582-122785 bp Feature: gene Location: 122959-124692 bp Feature: domain Description: Ser_Recombinase Location: 122983-123424 bp Feature: domain Description: Ser_Recombinase Location: 122983 -123 424 bp Feature: domain Description: Recombinase Location: 123550-123829 bp Feature: domain Description: Recombinase Location: 123 550-123 829 bp Feature: domain Description: Zn_ribbon_recom Location: 123874-124030 bp Feature: domain Description: Zn_ribbon_recom Location: 123 874-12403 0 bp Feature: gene Location: 124742-125587 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 124811-125342 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 124811-1253 42 bp Feature: gene Location: 125682-125990 bp Feature: domain Description: HTH_XRE Location: 125697-125859 bp Feature: domain Description: HTH_XRE Location: 125697-125859 bp Feature: gene Location: 126023-126181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR00368 (Mg chelatase-related protein), Ser_Recombinase (cl02788), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-Retrons, HTH_XRE (smart00530)