myRT

myRT report for GCA_014077045.1_ASM1407704v1

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Seq: JACGVB010000082.1 Colwellia sp. MB3u-70 NODE_966858_length_271836_cov_26.2, whole genome shotgun sequence (271836 bp)
Overview 1 RT 1: 207031-209988 bp Neighborhood of RT #1 [207031, 209988] PEP-CTERM RVT-UG4 YdjM Feature: gene Location: 207031-207663 bp Feature: domain Description: PEP-CTERM Location: 207586-207646 bp Feature: domain Description: PEP-CTERM Location: 207586-207646 bp Feature: gene Location: 207687-207833 bp Feature: gene Location: 207885-208091 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 207897-208074 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 207897-208074 bp Feature: gene Location: 208721-209767 bp Feature: domain Description: YdjM Location: 208724-209249 bp Feature: domain Description: YdjM Location: 208724-209249 bp Feature: gene Location: 209806-209988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP-CTERM, RVT-UG4, YdjM (pfam04307)

Seq: JACGVB010000087.1 Colwellia sp. MB3u-70 NODE_966892_length_120829_cov_22.3, whole genome shotgun sequence (120829 bp)
Overview 1 RT 1: 19625-26163 bp 2 RT 2: 31902-38151 bp Neighborhood of RT #1 [19625, 27095] CheY RVT-Retrons TPR TPR Neighborhood of RT #2 [31902, 38151] KOG0617 LRR KOG0617 DnaJ RVT-UG17 Feature: gene Location: 19625-21355 bp Feature: domain Description: CheY Location: 20390-20756 bp Feature: domain Description: CheY Location: 2 0390-2 0756 bp Feature: gene Location: 21348-21725 bp Feature: gene Location: 21722-23902 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21740-22316 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 1740-2 2 316 bp Feature: gene Location: 24443-25177 bp Feature: gene Location: 25182-27095 bp Feature: domain Description: TPR Location: 25227-25614 bp Feature: domain Description: TPR Location: 2 52 2 7-2 5614 bp Feature: domain Description: TPR Location: 25923-26163 bp Feature: domain Description: TPR Location: 2 592 3-2 6163 bp Feature: gene Location: 31902-32639 bp Feature: domain Description: KOG0617 Location: 32058-32307 bp Feature: domain Description: KOG0617 Location: 32 058-32 307 bp Feature: domain Description: LRR Location: 32307-32367 bp Feature: domain Description: LRR Location: 32 307-32 367 bp Feature: domain Description: KOG0617 Location: 32385-32535 bp Feature: domain Description: KOG0617 Location: 32 385-32 535 bp Feature: gene Location: 32802-34226 bp Feature: domain Description: DnaJ Location: 33558-33678 bp Feature: domain Description: DnaJ Location: 33558-33678 bp Feature: gene Location: 34283-35815 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34493-35102 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34493-35102 bp Feature: gene Location: 37415-37747 bp Feature: gene Location: 37999-38151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheY (COG0784), RVT-Retrons, TPR (smart00028), KOG0617 (KOG0617, Ras suppressor protein (contains leucine-rich repeats) ), LRR (smart00370), DnaJ (smart00271), RVT-UG17

Seq: JACGVB010000093.1 Colwellia sp. MB3u-70 NODE_966930_length_259796_cov_23.1, whole genome shotgun sequence (259796 bp)
Overview 1 RT 1: 1834-5939 bp 2 RT 2: 220625-229401 bp Neighborhood of RT #1 [1834, 5944] RVT-UG4 PRK05467 Neighborhood of RT #2 [220625, 229401] OYE_like_FMN COG5001 RVT-UG4 TLD PEP-CTERM PEP-CTERM RVT-UG4 Feature: gene Location: 1834-1962 bp Feature: gene Location: 2636-3040 bp Feature: gene Location: 3333-4343 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3672-4122 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 672-4122 bp Feature: gene Location: 4865-5164 bp Feature: gene Location: 5264-5944 bp Feature: domain Description: PRK05467 Location: 5267-5939 bp Feature: domain Description: PRK05467 Location: 5267-593 9 bp Feature: gene Location: 220625-221716 bp Feature: domain Description: OYE_like_FMN Location: 220640-221648 bp Feature: domain Description: OYE_like_FMN Location: 220640-221648 bp Feature: gene Location: 222169-223965 bp Feature: domain Description: COG5001 Location: 222637-223939 bp Feature: domain Description: COG5001 Location: 22263 7-223 93 9 bp Feature: gene Location: 224523-225122 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 224862-225120 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 224862-225120 bp Feature: gene Location: 225507-226217 bp Feature: domain Description: TLD Location: 225783-226101 bp Feature: domain Description: TLD Location: 225783 -226101 bp Feature: domain Description: PEP-CTERM Location: 226137-226200 bp Feature: domain Description: PEP-CTERM Location: 22613 7-226200 bp Feature: gene Location: 227470-227598 bp Feature: gene Location: 227792-228394 bp Feature: domain Description: PEP-CTERM Location: 228317-228377 bp Feature: domain Description: PEP-CTERM Location: 2283 17-2283 77 bp Feature: gene Location: 228416-228679 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 228422-228614 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 228422-228614 bp Feature: gene Location: 228666-229019 bp Feature: gene Location: 229231-229401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PRK05467 (Fe(II)-dependent oxygenase superfamily protein; Provisional), OYE_like_FMN (cd02933), COG5001 (Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain ), TLD (pfam07534), PEP-CTERM