myRT

myRT report for GCA_014077375.1_ASM1407737v1

Download annotations/find similar RTs

Seq: JACGVU010000168.1 Colwellia sp. BRX8-2 NODE_76214_length_5166_cov_3.5, whole genome shotgun sequence (5166 bp)
Overview 1 RT 1: 3-3534 bp Neighborhood of RT #1 [3, 3794] PRK05714 RVT-Retrons WYL Feature: gene Location: 3-158 bp Feature: domain Description: PRK05714 Location: 6-126 bp Feature: domain Description: PRK0571 4 Location: 6-1 26 bp Feature: gene Location: 401-1333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 503-1094 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 503-1 094 bp Feature: gene Location: 1689-2840 bp Feature: gene Location: 2958-3794 bp Feature: domain Description: WYL Location: 3288-3534 bp Feature: domain Description: WYL Location: 3288-3534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05714 (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional), RVT-Retrons, WYL (pfam13280)

Seq: JACGVU010000020.1 Colwellia sp. BRX8-2 NODE_76838_length_53106_cov_4.3, whole genome shotgun sequence (53106 bp)
Overview 1 RT 1: 15336-25063 bp Neighborhood of RT #1 [15336, 25071] HsdM HsdS RMtype1_S_StySPI-TRD2-CR2_like RMtype1_S_StySPI-TRD2-CR2_like RVT-UG1 primase_Cterm COG4643 Feature: gene Location: 15336-16820 bp Feature: domain Description: HsdM Location: 15342-16806 bp Feature: domain Description: HsdM Location: 15342 -16806 bp Feature: gene Location: 16823-18547 bp Feature: domain Description: HsdS Location: 16841-17177 bp Feature: domain Description: HsdS Location: 16841-17177 bp Feature: domain Description: RMtype1_S_StySPI-TRD2-CR2_like Location: 17417-17645 bp Feature: domain Description: RMtype1_S_StySPI-TRD2 -CR2 _like Location: 17417-17645 bp Feature: domain Description: RMtype1_S_StySPI-TRD2-CR2_like Location: 17960-18527 bp Feature: domain Description: RMtype1_S_StySPI-TRD2 -CR2 _like Location: 17960-1852 7 bp Feature: gene Location: 18676-22455 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 19360-19849 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 19360-19849 bp Feature: gene Location: 22841-24184 bp Feature: domain Description: primase_Cterm Location: 23261-23831 bp Feature: domain Description: primase_Cterm Location: 2 32 61-2 3831 bp Feature: gene Location: 24181-25071 bp Feature: domain Description: COG4643 Location: 24337-25063 bp Feature: domain Description: COG4643 Location: 2 4337-2 5063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), HsdS (COG0732), RMtype1_S_StySPI-TRD2-CR2_like (cd17523), RVT-UG1, primase_Cterm (TIGR01613), COG4643 (Uncharacterized domain associated with phage/plasmid primase )