myRT

myRT report for GCA_014077655.1_ASM1407765v1

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Seq: JACGWQ010000102.1 Salmonella enterica subsp. enterica serovar Irumu strain InDRE17_111 D111-_102, whole genome shotgun sequence (76526 bp)
Overview 1 RT 1: 65614-69640 bp 2 RT 2: 73221-76080 bp Neighborhood of RT #1 [65614, 69640] DUF905 PRK09010 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [73221, 76136] PRK13699 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 65614-65856 bp Feature: domain Description: DUF905 Location: 65647-65848 bp Feature: domain Description: DUF905 Location: 65647-65848 bp Feature: gene Location: 65909-66394 bp Feature: domain Description: PRK09010 Location: 65912-66392 bp Feature: domain Description: PRK0901 0 Location: 6591 2-66392 bp Feature: gene Location: 66571-68472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66838-67669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66838-67669 bp Feature: domain Description: Intron_maturas2 Location: 67783-68041 bp Feature: domain Description: Intron_maturas2 Location: 67783-68041 bp Feature: domain Description: HNHc Note: nucleases Location: 68215-68377 bp Feature: domain Description: HNHc Note: nucleases Location: 6821 5-68377 bp Feature: gene Location: 69192-69341 bp Feature: gene Location: 69359-69640 bp Feature: gene Location: 73221-73847 bp Feature: domain Description: PRK13699 Location: 73245-73845 bp Feature: domain Description: PRK1 3699 Location: 73245-73845 bp Feature: gene Location: 74274-74411 bp Feature: gene Location: 74436-76136 bp Feature: domain Description: RVT_N Location: 74490-74733 bp Feature: domain Description: RVT_N Location: 74490-74733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74778-75414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74778-7541 4 bp Feature: domain Description: GIIM Note: maturase Location: 75465-75699 bp Feature: domain Description: GIIM Note: maturase Location: 75465-75699 bp Feature: domain Description: HNHc Note: nucleases Location: 75930-76080 bp Feature: domain Description: HNHc Note: nucleases Location: 75930-76080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), GIIM (pfam08388)

Seq: JACGWQ010000241.1 Salmonella enterica subsp. enterica serovar Irumu strain InDRE17_111 D111-_241, whole genome shotgun sequence (15496 bp)
Overview 1 RT 1: 3-2365 bp Neighborhood of RT #1 [3, 2365] ZF_C2H2 RVT-GII GIIM RVT_N Feature: gene Location: 3-146 bp Feature: gene Location: 173-715 bp Feature: domain Description: ZF_C2H2 Location: 437-578 bp Feature: domain Description: ZF_C2 H2 Location: 437-578 bp Feature: gene Location: 795-1502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 819-1005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 819-1005 bp Feature: domain Description: GIIM Note: maturase Location: 1056-1290 bp Feature: domain Description: GIIM Note: maturase Location: 1056-12 90 bp Feature: gene Location: 1528-1845 bp Feature: domain Description: RVT_N Location: 1636-1834 bp Feature: domain Description: RVT_N Location: 1636-1834 bp Feature: gene Location: 2120-2365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZF_C2H2 (sd00020), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: JACGWQ010000326.1 Salmonella enterica subsp. enterica serovar Irumu strain InDRE17_111 D111-_326, whole genome shotgun sequence (5122 bp)
Overview 1 RT 1: 1-4679 bp Neighborhood of RT #1 [1, 4690] RVT-UG4 PTS-II-BC-glcB PRK10014 Feature: gene Location: 1-1377 bp Feature: gene Location: 1448-2005 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1601-1835 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1601-183 5 bp Feature: gene Location: 2090-3589 bp Feature: domain Description: PTS-II-BC-glcB Location: 2123-3569 bp Feature: domain Description: PTS-II-BC-glcB Location: 2123 -3 569 bp Feature: gene Location: 3617-4690 bp Feature: domain Description: PRK10014 Location: 3674-4679 bp Feature: domain Description: PRK10014 Location: 3 674-4679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PTS-II-BC-glcB (TIGR02002), PRK10014 (DNA-binding transcriptional repressor MalI; Provisional)

Seq: JACGWQ010000455.1 Salmonella enterica subsp. enterica serovar Irumu strain InDRE17_111 D111-_456, whole genome shotgun sequence (1119 bp)
Overview 1 RT 1: 3-834 bp Neighborhood of RT #1 [3, 1118] RVT-UG4 Feature: gene Location: 3-1118 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 393-834 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 393-834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4