myRT

myRT report for GCA_014103585.1_ASM1410358v1

Download annotations/find similar RTs

Seq: JABXQG010000002.1 Citrobacter sp. RHBSTW-00325 plasmid pRHBSTW-00325_2, whole genome shotgun sequence (119060 bp)
Overview 1 RT 1: 47829-51880 bp Neighborhood of RT #1 [47829, 51945] IS5 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 47829-48722 bp Feature: domain Description: IS5 Location: 48054-48708 bp Feature: domain Description: IS5 Location: 48054-48708 bp Feature: gene Location: 48863-49243 bp Feature: domain Description: PHA02517 Location: 48866-49235 bp Feature: domain Description: PHA0251 7 Location: 48866-49235 bp Feature: gene Location: 49420-50943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49693-50425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49693-50425 bp Feature: domain Description: GIIM Note: maturase Location: 50500-50698 bp Feature: domain Description: GIIM Note: maturase Location: 50500-50698 bp Feature: gene Location: 50897-51322 bp Feature: gene Location: 51535-51945 bp Feature: domain Description: PHA02517 Location: 51541-51880 bp Feature: domain Description: PHA0251 7 Location: 51 541 -51 880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JABXQG010000001.1 Citrobacter sp. RHBSTW-00325 RHBSTW-00325_1, whole genome shotgun sequence (5270205 bp)
Overview 1 RT 1: 2628616-2633816 bp 2 RT 2: 4456771-4465581 bp 3 RT 3: 4599559-4604780 bp Neighborhood of RT #1 [2628616, 2633821] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 fruct_sucro_rep Neighborhood of RT #2 [4456771, 4465976] InsE PHA02517 RVT-GII GIIM PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Neighborhood of RT #3 [4599559, 4604780] HTH_Tnp_1 HTH_21 RVT-GII GIIM Feature: gene Location: 2628616-2629767 bp Feature: domain Description: HTH_38 Location: 2628625-2628739 bp Feature: domain Description: HTH_38 Location: 2 62 862 5-2 62 8739 bp Feature: domain Description: Tra8 Location: 2628775-2629756 bp Feature: domain Description: Tra8 Location: 2 62 8775-2 62 9756 bp Feature: gene Location: 2629843-2630268 bp Feature: domain Description: PHA02517 Location: 2629867-2630203 bp Feature: domain Description: PHA02 517 Location: 2 62 9867-2 6302 03 bp Feature: gene Location: 2630860-2632383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631133-2631865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 631133-2 631865 bp Feature: domain Description: GIIM Note: maturase Location: 2631940-2632138 bp Feature: domain Description: GIIM Note: maturase Location: 2 631940-2 632 138 bp Feature: gene Location: 2632541-2632705 bp Feature: domain Description: PHA02517 Location: 2632580-2632673 bp Feature: domain Description: PHA02 517 Location: 2 632 580-2 632 673 bp Feature: gene Location: 2632817-2633821 bp Feature: domain Description: fruct_sucro_rep Location: 2632838-2633816 bp Feature: domain Description: fruct_sucro_rep Location: 2 632 838-2 633816 bp Feature: gene Location: 4456771-4457055 bp Feature: domain Description: InsE Location: 4456783-4457044 bp Feature: domain Description: InsE Location: 4456783-4457044 bp Feature: gene Location: 4457097-4457522 bp Feature: domain Description: PHA02517 Location: 4457124-4457457 bp Feature: domain Description: PHA02 517 Location: 445712 4-4457457 bp Feature: gene Location: 4458114-4459637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4458387-4459119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4458387-4459119 bp Feature: domain Description: GIIM Note: maturase Location: 4459194-4459392 bp Feature: domain Description: GIIM Note: maturase Location: 4459194-4459392 bp Feature: gene Location: 4459760-4460176 bp Feature: domain Description: PHA02517 Location: 4459763-4460168 bp Feature: domain Description: PHA02 517 Location: 4459763-4460168 bp Feature: gene Location: 4460229-4465976 bp Feature: domain Description: DUF4011 Location: 4460331-4461165 bp Feature: domain Description: DUF4011 Location: 4460331-4461165 bp Feature: domain Description: DEXXQc_SF1 Location: 4461522-4464624 bp Feature: domain Description: DEXXQc_SF1 Location: 446152 2 -446462 4 bp Feature: domain Description: SF1_C_Upf1 Location: 4464633-4465161 bp Feature: domain Description: SF1_C_Upf1 Location: 4464633-4465161 bp Feature: domain Description: MTES_1575 Location: 4465290-4465581 bp Feature: domain Description: MTES_1575 Location: 44652 90-4465581 bp Feature: gene Location: 4599559-4600074 bp Feature: domain Description: HTH_Tnp_1 Location: 4599571-4599766 bp Feature: domain Description: HTH_Tnp_1 Location: 4599571-4599766 bp Feature: domain Description: HTH_21 Location: 4599970-4600060 bp Feature: domain Description: HTH_2 1 Location: 4599970-4600060 bp Feature: gene Location: 4600099-4600281 bp Feature: gene Location: 4600902-4602425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4601175-4601907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4601175-4601907 bp Feature: domain Description: GIIM Note: maturase Location: 4601982-4602180 bp Feature: domain Description: GIIM Note: maturase Location: 4601982 -4602 180 bp Feature: gene Location: 4602738-4603007 bp Feature: gene Location: 4603242-4604780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fruct_sucro_rep (TIGR02417), InsE (COG2963), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808)
MTES_1575 (pfam18741), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276)