myRT

myRT report for GCA_014104015.1_ASM1410401v1

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Seq: JABXRD010000001.1 Citrobacter freundii strain RHBSTW-00142 RHBSTW-00142_1, whole genome shotgun sequence (4962235 bp)
Overview 1 RT 1: 720436-727532 bp 2 RT 2: 2108702-2113902 bp 3 RT 3: 2835773-2838988 bp Neighborhood of RT #1 [720436, 727615] XerC RVT-UG8 HTH_23 HTH_33 DDE_3 Neighborhood of RT #2 [2108702, 2113907] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 fruct_sucro_rep Neighborhood of RT #3 [2835773, 2839800] HTH_XRE RVT-Retrons MobA_MobL Feature: gene Location: 720436-721695 bp Feature: domain Description: XerC Location: 720790-721660 bp Feature: domain Description: XerC Location: 720790-721 660 bp Feature: gene Location: 722264-722428 bp Feature: gene Location: 722872-724914 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 723484-723931 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 723484-723931 bp Feature: gene Location: 726308-726664 bp Feature: gene Location: 726584-727615 bp Feature: domain Description: HTH_23 Location: 726668-726803 bp Feature: domain Description: HTH_23 Location: 726668-726803 bp Feature: domain Description: HTH_33 Location: 726908-727055 bp Feature: domain Description: HTH_33 Location: 726908-727055 bp Feature: domain Description: DDE_3 Location: 727115-727532 bp Feature: domain Description: DDE_3 Location: 7271 1 5-727532 bp Feature: gene Location: 2108702-2109853 bp Feature: domain Description: HTH_38 Location: 2108711-2108825 bp Feature: domain Description: HTH_38 Location: 21 0871 1 -21 08825 bp Feature: domain Description: Tra8 Location: 2108861-2109842 bp Feature: domain Description: Tra8 Location: 21 08861 -21 09842 bp Feature: gene Location: 2109929-2110354 bp Feature: domain Description: PHA02517 Location: 2109953-2110289 bp Feature: domain Description: PHA0251 7 Location: 21 09953-21 1 0289 bp Feature: gene Location: 2110946-2112469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2111219-2111951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 1 21 9-21 1 1 951 bp Feature: domain Description: GIIM Note: maturase Location: 2112026-2112224 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 2026-21 1 2224 bp Feature: gene Location: 2112627-2112791 bp Feature: domain Description: PHA02517 Location: 2112666-2112759 bp Feature: domain Description: PHA0251 7 Location: 21 1 2666-21 1 2759 bp Feature: gene Location: 2112903-2113907 bp Feature: domain Description: fruct_sucro_rep Location: 2112924-2113902 bp Feature: domain Description: fruct_sucro_rep Location: 21 1 2924-21 1 3902 bp Feature: gene Location: 2835773-2835988 bp Feature: gene Location: 2836079-2836360 bp Feature: domain Description: HTH_XRE Location: 2836094-2836259 bp Feature: domain Description: HTH_XRE Location: 2836094-2836259 bp Feature: gene Location: 2836353-2837453 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2836494-2837049 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2836494-2837049 bp Feature: gene Location: 2838177-2838326 bp Feature: gene Location: 2838400-2839800 bp Feature: domain Description: MobA_MobL Location: 2838451-2838988 bp Feature: domain Description: MobA_MobL Location: 2838451 -2838988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), RVT-UG8, HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)
fruct_sucro_rep (TIGR02417), HTH_XRE (smart00530), RVT-Retrons, MobA_MobL (pfam03389)