myRT

myRT report for GCA_014104105.1_ASM1410410v1

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Seq: JABXRI010000002.1 Citrobacter freundii strain RHBSTW-00116 plasmid pRHBSTW-00116_2, whole genome shotgun sequence (98175 bp)
Overview 1 RT 1: 34282-37827 bp 2 RT 2: 41559-45121 bp Neighborhood of RT #1 [34282, 37892] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [41559, 45126] RVT-GII ArdC Feature: gene Location: 34282-34794 bp Feature: gene Location: 34810-35190 bp Feature: domain Description: PHA02517 Location: 34813-35182 bp Feature: domain Description: PHA0251 7 Location: 3481 3-351 82 bp Feature: gene Location: 35367-36890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35640-36372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35640-36372 bp Feature: domain Description: GIIM Note: maturase Location: 36447-36645 bp Feature: domain Description: GIIM Note: maturase Location: 36447-36645 bp Feature: gene Location: 36844-37269 bp Feature: gene Location: 37482-37892 bp Feature: domain Description: PHA02517 Location: 37488-37827 bp Feature: domain Description: PHA0251 7 Location: 37488-37827 bp Feature: gene Location: 41559-41828 bp Feature: gene Location: 41988-42200 bp Feature: gene Location: 42275-43684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42602-43292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42602-43292 bp Feature: gene Location: 43900-44136 bp Feature: gene Location: 44155-45126 bp Feature: domain Description: ArdC Location: 44287-45121 bp Feature: domain Description: ArdC Location: 44287-451 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ArdC (COG4227)

Seq: JABXRI010000001.1 Citrobacter freundii strain RHBSTW-00116 RHBSTW-00116_1, whole genome shotgun sequence (5123390 bp)
Overview 1 RT 1: 4042138-4046528 bp 2 RT 2: 4727813-4731496 bp 3 RT 3: 4867254-4872503 bp Neighborhood of RT #1 [4042138, 4046528] PHA02517 COG3547 RVT-GII GIIM Neighborhood of RT #2 [4727813, 4731496] PRK10141 PHA02517 RVT-GII GIIM Neighborhood of RT #3 [4867254, 4872619] rve PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 4042138-4042380 bp Feature: domain Description: PHA02517 Location: 4042141-4042360 bp Feature: domain Description: PHA02 517 Location: 4042 141-4042 360 bp Feature: gene Location: 4042463-4043539 bp Feature: domain Description: COG3547 Location: 4042502-4043423 bp Feature: domain Description: COG3547 Location: 4042 502 -404342 3 bp Feature: gene Location: 4044081-4045604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4044354-4045086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4044354-4045086 bp Feature: domain Description: GIIM Note: maturase Location: 4045161-4045359 bp Feature: domain Description: GIIM Note: maturase Location: 4045161-4045359 bp Feature: gene Location: 4045898-4046335 bp Feature: gene Location: 4046340-4046528 bp Feature: gene Location: 4727813-4728163 bp Feature: domain Description: PRK10141 Location: 4727819-4728158 bp Feature: domain Description: PRK10141 Location: 472 7819-472 8158 bp Feature: gene Location: 4728465-4728845 bp Feature: domain Description: PHA02517 Location: 4728468-4728837 bp Feature: domain Description: PHA02 517 Location: 472 8468-472 8837 bp Feature: gene Location: 4729022-4730545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4729295-4730027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472 92 95-473002 7 bp Feature: domain Description: GIIM Note: maturase Location: 4730102-4730300 bp Feature: domain Description: GIIM Note: maturase Location: 4730102 -4730300 bp Feature: gene Location: 4730499-4730924 bp Feature: gene Location: 4731176-4731496 bp Feature: gene Location: 4867254-4868069 bp Feature: domain Description: rve Location: 4867608-4867944 bp Feature: domain Description: rve Location: 4867608-4867944 bp Feature: gene Location: 4868368-4868886 bp Feature: domain Description: PHA02517 Location: 4868488-4868821 bp Feature: domain Description: PHA02 517 Location: 4868488-486882 1 bp Feature: gene Location: 4869478-4871001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4869751-4870483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4869751-4870483 bp Feature: domain Description: GIIM Note: maturase Location: 4870558-4870756 bp Feature: domain Description: GIIM Note: maturase Location: 4870558-4870756 bp Feature: gene Location: 4871166-4871324 bp Feature: domain Description: PHA02517 Location: 4871169-4871289 bp Feature: domain Description: PHA02 517 Location: 4871169-48712 89 bp Feature: gene Location: 4871543-4872619 bp Feature: domain Description: COG3547 Location: 4871582-4872503 bp Feature: domain Description: COG3547 Location: 4871582 -4872 503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PRK10141 (DNA-binding transcriptional repressor ArsR; Provisional), rve (pfam00665)

Seq: JABXRI010000003.1 Citrobacter freundii strain RHBSTW-00116 RHBSTW-00116_3, whole genome shotgun sequence (87428 bp)
Overview 1 RT 1: 39464-42929 bp Neighborhood of RT #1 [39464, 42994] DDE_Tnp_IS1 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 39464-39727 bp Feature: domain Description: DDE_Tnp_IS1 Location: 39467-39683 bp Feature: domain Description: DDE_Tnp_IS1 Location: 3 9467-3 9683 bp Feature: gene Location: 39861-40241 bp Feature: domain Description: PHA02517 Location: 39864-40230 bp Feature: domain Description: PHA02517 Location: 3 9864-4023 0 bp Feature: gene Location: 40418-41941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40691-41423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40691-41423 bp Feature: domain Description: GIIM Note: maturase Location: 41498-41696 bp Feature: domain Description: GIIM Note: maturase Location: 41498-41696 bp Feature: gene Location: 41895-42320 bp Feature: gene Location: 42533-42994 bp Feature: domain Description: PHA02517 Location: 42590-42929 bp Feature: domain Description: PHA02517 Location: 42590-42929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)