myRT

myRT report for GCA_014104235.1_ASM1410423v1

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Seq: JABXRO010000001.1 Citrobacter sp. RHBSTW-00089 RHBSTW-00089_1, whole genome shotgun sequence (5245879 bp)
Overview 1 RT 1: 1800680-1804114 bp 2 RT 2: 3026211-3030238 bp 3 RT 3: 3853362-3858912 bp 4 RT 4: 3869197-3873110 bp 5 RT 5: 4287349-4294762 bp Neighborhood of RT #1 [1800680, 1804128] RVT-GII GIIM HTH_Tnp_1 HTH_21 Neighborhood of RT #2 [3026211, 3030238] MobA_MobL RVT-Retrons HTH_XRE Neighborhood of RT #3 [3853362, 3858968] RadC RVT-GII GIIM PHA02517 Arm-DNA-bind_3 XerC Neighborhood of RT #4 [3869197, 3873175] fruct_sucro_rep RVT-GII GIIM PHA02517 Neighborhood of RT #5 [4287349, 4294773] PRK10141 PHA02517 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 InsE RVT-GII PHA02517 HTH_38 Tra8 Feature: gene Location: 1800680-1800949 bp Feature: gene Location: 1800995-1801180 bp Feature: gene Location: 1801262-1802785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801535-1802267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 801 535-1 802267 bp Feature: domain Description: GIIM Note: maturase Location: 1802342-1802540 bp Feature: domain Description: GIIM Note: maturase Location: 1 802342-1 802540 bp Feature: gene Location: 1803079-1803450 bp Feature: gene Location: 1803613-1804128 bp Feature: domain Description: HTH_Tnp_1 Location: 1803625-1803820 bp Feature: domain Description: HTH_Tnp_1 Location: 1 803625-1 803820 bp Feature: domain Description: HTH_21 Location: 1804024-1804114 bp Feature: domain Description: HTH_21 Location: 1 804024-1 8041 1 4 bp Feature: gene Location: 3026211-3027611 bp Feature: domain Description: MobA_MobL Location: 3026262-3026799 bp Feature: domain Description: MobA_MobL Location: 3026262-3026799 bp Feature: gene Location: 3027689-3028348 bp Feature: gene Location: 3028558-3029658 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3028699-3029254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3028699-3029254 bp Feature: gene Location: 3029651-3029932 bp Feature: domain Description: HTH_XRE Location: 3029666-3029831 bp Feature: domain Description: HTH_XRE Location: 3029666-3029831 bp Feature: gene Location: 3030023-3030238 bp Feature: gene Location: 3853362-3853907 bp Feature: domain Description: RadC Location: 3853461-3853905 bp Feature: domain Description: RadC Location: 3853461 -3853905 bp Feature: gene Location: 3854296-3854613 bp Feature: gene Location: 3855244-3856767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3855517-3856249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385551 7-3856249 bp Feature: domain Description: GIIM Note: maturase Location: 3856324-3856522 bp Feature: domain Description: GIIM Note: maturase Location: 3856324-3856522 bp Feature: gene Location: 3856944-3857324 bp Feature: domain Description: PHA02517 Location: 3856947-3857316 bp Feature: domain Description: PHA0251 7 Location: 3856947-385731 6 bp Feature: gene Location: 3857649-3858968 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3857736-3857934 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3857736-3857934 bp Feature: domain Description: XerC Location: 3858036-3858912 bp Feature: domain Description: XerC Location: 3858036-385891 2 bp Feature: gene Location: 3869197-3870201 bp Feature: domain Description: fruct_sucro_rep Location: 3869218-3870196 bp Feature: domain Description: fruct_sucro_rep Location: 386921 8-38701 96 bp Feature: gene Location: 3870343-3870522 bp Feature: gene Location: 3870635-3872158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3870908-3871640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3870908-3871 640 bp Feature: domain Description: GIIM Note: maturase Location: 3871715-3871913 bp Feature: domain Description: GIIM Note: maturase Location: 3871 71 5-3871 91 3 bp Feature: gene Location: 3872112-3872537 bp Feature: gene Location: 3872750-3873175 bp Feature: domain Description: PHA02517 Location: 3872774-3873110 bp Feature: domain Description: PHA0251 7 Location: 3872774-38731 1 0 bp Feature: gene Location: 4287349-4287699 bp Feature: domain Description: PRK10141 Location: 4287355-4287694 bp Feature: domain Description: PRK1 01 41 Location: 4287355-4287694 bp Feature: gene Location: 4288001-4288381 bp Feature: domain Description: PHA02517 Location: 4288004-4288373 bp Feature: domain Description: PHA0251 7 Location: 4288004-4288373 bp Feature: gene Location: 4288558-4289544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4288561-4289026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4288561 -4289026 bp Feature: domain Description: GIIM Note: maturase Location: 4289101-4289299 bp Feature: domain Description: GIIM Note: maturase Location: 42891 01 -4289299 bp Feature: gene Location: 4289619-4291154 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4289736-4289949 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4289736-4289949 bp Feature: domain Description: zf-IS66 Location: 4289970-4290102 bp Feature: domain Description: zf-IS66 Location: 4289970-42901 02 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4290147-4291002 bp Feature: domain Description: DDE_Tnp_IS66 Location: 42901 47-4291 002 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4291023-4291134 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4291 023-4291 1 34 bp Feature: gene Location: 4291204-4291551 bp Feature: domain Description: TnpB_IS66 Location: 4291231-4291522 bp Feature: domain Description: TnpB_IS66 Location: 4291 231 -4291 522 bp Feature: gene Location: 4291548-4291931 bp Feature: domain Description: InsE Location: 4291566-4291737 bp Feature: domain Description: InsE Location: 4291 566-4291 737 bp Feature: gene Location: 4292011-4292526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4292284-4292521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4292284-4292521 bp Feature: gene Location: 4293118-4293528 bp Feature: domain Description: PHA02517 Location: 4293124-4293463 bp Feature: domain Description: PHA0251 7 Location: 42931 24-4293463 bp Feature: gene Location: 4293622-4294773 bp Feature: domain Description: HTH_38 Location: 4293631-4293745 bp Feature: domain Description: HTH_38 Location: 4293631 -4293745 bp Feature: domain Description: Tra8 Location: 4293781-4294762 bp Feature: domain Description: Tra8 Location: 4293781 -4294762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), MobA_MobL (pfam03389), RVT-Retrons, HTH_XRE (smart00530), RadC (pfam04002), PHA02517 (putative transposase OrfB; Reviewed), Arm-DNA-bind_3 (pfam13356)
XerC (COG4973), fruct_sucro_rep (TIGR02417), PRK10141 (DNA-binding transcriptional repressor ArsR; Provisional), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), InsE (COG2963), HTH_38 (pfam13936)
Tra8 (COG2826)