myRT

myRT report for GCA_014105935.1_ASM1410593v1

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Seq: JABXUZ010000001.1 Escherichia fergusonii strain RHB08-C04 RHB08-C04_1, whole genome shotgun sequence (4570877 bp)
Overview 1 RT 1: 238447-242765 bp 2 RT 2: 262264-266142 bp 3 RT 3: 3481655-3490443 bp Neighborhood of RT #1 [238447, 242782] Psu RVT-UG17 SLATT_5 PRK09692 Neighborhood of RT #2 [262264, 266147] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #3 [3481655, 3490448] PRK13289 RVT-UG4 IAT_beta Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Transposase_mut Feature: gene Location: 238447-239019 bp Feature: domain Description: Psu Location: 238465-239002 bp Feature: domain Description: Psu Location: 238465-239002 bp Feature: gene Location: 239072-239221 bp Feature: gene Location: 239342-240751 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 239579-240191 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 239579-2401 91 bp Feature: gene Location: 240850-241587 bp Feature: domain Description: SLATT_5 Location: 240949-241555 bp Feature: domain Description: SLATT_5 Location: 240949-241 555 bp Feature: gene Location: 241604-242782 bp Feature: domain Description: PRK09692 Location: 241613-242765 bp Feature: domain Description: PRK09692 Location: 241 61 3-242765 bp Feature: gene Location: 262264-262980 bp Feature: domain Description: rph Location: 262267-262975 bp Feature: domain Description: rph Location: 262267-262975 bp Feature: gene Location: 263031-263687 bp Feature: domain Description: pyrE Location: 263049-263682 bp Feature: domain Description: pyrE Location: 263049-263682 bp Feature: gene Location: 263983-264942 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 264118-264667 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2641 1 8-264667 bp Feature: gene Location: 264986-265582 bp Feature: domain Description: slmA Location: 264992-265568 bp Feature: domain Description: slmA Location: 264992-265568 bp Feature: gene Location: 265689-266147 bp Feature: domain Description: dut Location: 265695-266142 bp Feature: domain Description: dut Location: 265695-2661 42 bp Feature: gene Location: 3481655-3481831 bp Feature: gene Location: 3481858-3483069 bp Feature: domain Description: PRK13289 Location: 3481882-3483067 bp Feature: domain Description: PRK1 3289 Location: 3481 882-3483067 bp Feature: gene Location: 3483332-3483679 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3483338-3483596 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3483338-3483596 bp Feature: gene Location: 3483828-3490007 bp Feature: domain Description: IAT_beta Location: 3484074-3484890 bp Feature: domain Description: IAT_beta Location: 3484074-3484890 bp Feature: domain Description: Invasin_D3 Location: 3485229-3485532 bp Feature: domain Description: Invasin_D3 Location: 3485229-3485532 bp Feature: domain Description: Invasin_D3 Location: 3485625-3485832 bp Feature: domain Description: Invasin_D3 Location: 3485625-3485832 bp Feature: domain Description: Invasin_D3 Location: 3485886-3486189 bp Feature: domain Description: Invasin_D3 Location: 3485886-34861 89 bp Feature: domain Description: Invasin_D3 Location: 3486198-3486501 bp Feature: domain Description: Invasin_D3 Location: 34861 98-3486501 bp Feature: domain Description: Invasin_D3 Location: 3486510-3486813 bp Feature: domain Description: Invasin_D3 Location: 348651 0-348681 3 bp Feature: domain Description: Invasin_D3 Location: 3486822-3487125 bp Feature: domain Description: Invasin_D3 Location: 3486822-34871 25 bp Feature: domain Description: Invasin_D3 Location: 3487134-3487437 bp Feature: domain Description: Invasin_D3 Location: 34871 34-3487437 bp Feature: domain Description: Invasin_D3 Location: 3487446-3487749 bp Feature: domain Description: Invasin_D3 Location: 3487446-3487749 bp Feature: domain Description: Invasin_D3 Location: 3487758-3488061 bp Feature: domain Description: Invasin_D3 Location: 3487758-3488061 bp Feature: domain Description: Invasin_D3 Location: 3488070-3488373 bp Feature: domain Description: Invasin_D3 Location: 3488070-3488373 bp Feature: domain Description: Invasin_D3 Location: 3488382-3488685 bp Feature: domain Description: Invasin_D3 Location: 3488382-3488685 bp Feature: domain Description: Invasin_D3 Location: 3488766-3488934 bp Feature: domain Description: Invasin_D3 Location: 3488766-3488934 bp Feature: gene Location: 3490059-3490448 bp Feature: domain Description: Transposase_mut Location: 3490230-3490443 bp Feature: domain Description: Transposase_mut Location: 3490230-3490443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG17, SLATT_5 (pfam18160), PRK09692 (Integrase; provisional), rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), PRK13289 (NO-inducible flavohemoprotein)
RVT-UG4, IAT_beta (pfam11924), Invasin_D3 (pfam09134), Transposase_mut (pfam00872)