myRT

myRT report for GCA_014117655.1_ASM1411765v1

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Seq: JACGZP010000011.1 Escherichia coli strain 62122 976-19_contig_11, whole genome shotgun sequence (194064 bp)
Overview 1 RT 1: 23856-28147 bp Neighborhood of RT #1 [23856, 28147] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23856-25118 bp Feature: domain Description: YesM Location: 24369-25110 bp Feature: domain Description: YesM Location: 24369-251 1 0 bp Feature: gene Location: 25148-25318 bp Feature: gene Location: 25668-26189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25674-25956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25674-25956 bp Feature: domain Description: GIIM Note: maturase Location: 26004-26184 bp Feature: domain Description: GIIM Note: maturase Location: 26004-261 84 bp Feature: gene Location: 26217-26756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26547-26625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26547-26625 bp Feature: gene Location: 26787-26984 bp Feature: gene Location: 27242-28147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACGZP010000032.1 Escherichia coli strain 62122 976-19_contig_32, whole genome shotgun sequence (75670 bp)
Overview 1 RT 1: 49930-53813 bp Neighborhood of RT #1 [49930, 53818] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49930-50388 bp Feature: domain Description: dut Location: 49936-50383 bp Feature: domain Description: dut Location: 49936-50383 bp Feature: gene Location: 50495-51091 bp Feature: domain Description: slmA Location: 50501-51077 bp Feature: domain Description: slmA Location: 50501-51077 bp Feature: gene Location: 51137-52096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51272-51821 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 512 72 -5182 1 bp Feature: gene Location: 52394-53050 bp Feature: domain Description: pyrE Location: 52412-53045 bp Feature: domain Description: pyrE Location: 52 412 -53045 bp Feature: gene Location: 53102-53818 bp Feature: domain Description: rph Location: 53105-53813 bp Feature: domain Description: rph Location: 53105-53813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: JACGZP010000054.1 Escherichia coli strain 62122 976-19_contig_54, whole genome shotgun sequence (39082 bp)
Overview 1 RT 1: 25502-33532 bp Neighborhood of RT #1 [25502, 33765] RVT-GII GIIM TraG_N TraH Feature: gene Location: 25502-25789 bp Feature: gene Location: 26475-26837 bp Feature: gene Location: 27242-28603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27569-28184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27569-28184 bp Feature: domain Description: GIIM Note: maturase Location: 28241-28448 bp Feature: domain Description: GIIM Note: maturase Location: 28241-28448 bp Feature: gene Location: 28705-32319 bp Feature: domain Description: TraG_N Location: 28723-30106 bp Feature: domain Description: TraG_N Location: 28723 -3 0106 bp Feature: gene Location: 32332-33765 bp Feature: domain Description: TraH Location: 32443-33532 bp Feature: domain Description: TraH Location: 3 2443 -3 3 53 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TraG_N (pfam07916), TraH (pfam06122)