myRT

myRT report for GCA_014129435.1_ASM1412943v1

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Seq: JAABPE010000001.1 Staphylococcus schleiferi subsp. coagulans strain 66170 NODE_1_length_1317893_cov_63.9972_ID_883, whole genome shotgun sequence (1317893 bp)
Overview 1 RT 1: 886471-890488 bp 2 RT 2: 1014541-1016388 bp Neighborhood of RT #1 [886471, 890541] RVT-GII RVT-GII GIIM ComK Neighborhood of RT #2 [1014541, 1016477] RVT-GII INT_ICEBs1_C_like Feature: gene Location: 886471-886929 bp Feature: gene Location: 887449-887595 bp Feature: gene Location: 887673-888728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887898-887976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887898-887976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887997-888273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887997-888273 bp Feature: domain Description: GIIM Note: maturase Location: 888336-888564 bp Feature: domain Description: GIIM Note: maturase Location: 888336-888564 bp Feature: gene Location: 888780-888989 bp Feature: gene Location: 889915-890541 bp Feature: domain Description: ComK Location: 889939-890488 bp Feature: domain Description: ComK Location: 889939-890488 bp Feature: gene Location: 1014541-1014720 bp Feature: gene Location: 1014790-1015023 bp Feature: gene Location: 1015081-1015710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1015306-1015690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 5306-1 01 5690 bp Feature: gene Location: 1015762-1015971 bp Feature: gene Location: 1016058-1016477 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1016214-1016388 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 01 621 4-1 01 6388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ComK (pfam06338), INT_ICEBs1_C_like (cd01189)

Seq: JAABPE010000003.1 Staphylococcus schleiferi subsp. coagulans strain 66170 NODE_3_length_305588_cov_70.9386_ID_887, whole genome shotgun sequence (305588 bp)
Overview 1 RT 1: 179672-186520 bp Neighborhood of RT #1 [179672, 186546] DEXHc_Snf SF2_C_SNF COG3464 RVT-Retrons ABC2_membrane_3 CcmA Feature: gene Location: 179672-181546 bp Feature: domain Description: DEXHc_Snf Location: 180065-180674 bp Feature: domain Description: DEXHc_Snf Location: 180065-180674 bp Feature: domain Description: SF2_C_SNF Location: 180932-181346 bp Feature: domain Description: SF2 _C_SNF Location: 180932 -181346 bp Feature: gene Location: 181848-182669 bp Feature: domain Description: COG3464 Location: 181851-182610 bp Feature: domain Description: COG3464 Location: 181851-182 610 bp Feature: gene Location: 182845-184524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 182977-183586 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 182 977-183586 bp Feature: gene Location: 184736-185821 bp Feature: domain Description: ABC2_membrane_3 Location: 184790-185792 bp Feature: domain Description: ABC2 _membrane_3 Location: 184790-185792 bp Feature: gene Location: 185821-186546 bp Feature: domain Description: CcmA Location: 185839-186520 bp Feature: domain Description: CcmA Location: 185839-18652 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), SF2_C_SNF (cd18793), COG3464 (Transposase ), RVT-Retrons, ABC2_membrane_3 (pfam12698), CcmA (COG4133)