myRT

myRT report for GCA_014129655.1_ASM1412965v1

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Seq: JAATKZ010000008.1 Wolbachia pipientis isolate wAra wAra_Contig16, whole genome shotgun sequence (337978 bp)
Overview 1 RT 1: 44492-49649 bp 2 RT 2: 107734-112302 bp 3 RT 3: 315490-318409 bp Neighborhood of RT #1 [44492, 49663] PRK00230 RVT-GII major_cap_HK97 Neighborhood of RT #2 [107734, 112349] PDDEXK_2 RVT_N RVT-GII PDDEXK_2 PMM_PGM Neighborhood of RT #3 [315490, 318409] RVT-GII Feature: gene Location: 44492-45166 bp Feature: domain Description: PRK00230 Location: 44498-45143 bp Feature: domain Description: PRK00230 Location: 44498-451 43 bp Feature: gene Location: 45216-46013 bp Feature: gene Location: 46652-47965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46907-47597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46907-47597 bp Feature: gene Location: 48136-48339 bp Feature: gene Location: 48464-49663 bp Feature: domain Description: major_cap_HK97 Location: 48482-49649 bp Feature: domain Description: major_cap_HK97 Location: 48482-49649 bp Feature: gene Location: 107734-108177 bp Feature: domain Description: PDDEXK_2 Location: 107761-107980 bp Feature: domain Description: PDDEXK_2 Location: 1 07761 -1 07980 bp Feature: gene Location: 108434-108577 bp Feature: gene Location: 108615-109712 bp Feature: domain Description: RVT_N Location: 108666-108903 bp Feature: domain Description: RVT_N Location: 1 08666-1 08903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108954-109605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08954-1 09605 bp Feature: gene Location: 110159-110887 bp Feature: domain Description: PDDEXK_2 Location: 110285-110756 bp Feature: domain Description: PDDEXK_2 Location: 1 1 0285-1 1 0756 bp Feature: gene Location: 110994-112349 bp Feature: domain Description: PMM_PGM Location: 111009-112302 bp Feature: domain Description: PMM_PGM Location: 1 1 1 009-1 1 2302 bp Feature: gene Location: 315490-315996 bp Feature: gene Location: 316002-316190 bp Feature: gene Location: 316292-317605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316547-317237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 6547-31 7237 bp Feature: gene Location: 317776-317979 bp Feature: gene Location: 318104-318409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00230 (orotidine-5'-phosphate decarboxylase), RVT-GII, major_cap_HK97 (TIGR01554), PDDEXK_2 (pfam12784), RVT_N (pfam13655), PMM_PGM (cd03089)

Seq: JAATKZ010000009.1 Wolbachia pipientis isolate wAra wAra_Contig19, whole genome shotgun sequence (185314 bp)
Overview 1 RT 1: 12982-16366 bp 2 RT 2: 42275-45478 bp 3 RT 3: 96752-102577 bp Neighborhood of RT #1 [12982, 16366] RVT-GII pcrA Neighborhood of RT #2 [42275, 45498] PDDEXK_2 RVT_N RVT-GII T_den_put_tspse Neighborhood of RT #3 [96752, 102594] RVT-GII AlsT Feature: gene Location: 12982-13110 bp Feature: gene Location: 13143-13364 bp Feature: gene Location: 13527-13670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13530-13665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13530-13665 bp Feature: gene Location: 13894-15810 bp Feature: domain Description: pcrA Location: 13906-15790 bp Feature: domain Description: pcrA Location: 13906-15790 bp Feature: gene Location: 15938-16366 bp Feature: gene Location: 42275-42718 bp Feature: domain Description: PDDEXK_2 Location: 42302-42521 bp Feature: domain Description: PDDEXK_2 Location: 42 302 -42 52 1 bp Feature: gene Location: 42975-43118 bp Feature: gene Location: 43156-44253 bp Feature: domain Description: RVT_N Location: 43207-43444 bp Feature: domain Description: RVT_N Location: 432 07-43444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43495-44146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43495-44146 bp Feature: gene Location: 44356-44514 bp Feature: gene Location: 44698-45498 bp Feature: domain Description: T_den_put_tspse Location: 44824-45478 bp Feature: domain Description: T_den_put_tspse Location: 4482 4-45478 bp Feature: gene Location: 96752-97759 bp Feature: gene Location: 97859-98062 bp Feature: gene Location: 98233-99546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98488-99178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98488-99178 bp Feature: gene Location: 99788-100546 bp Feature: gene Location: 101128-102594 bp Feature: domain Description: AlsT Location: 101242-102577 bp Feature: domain Description: AlsT Location: 1012 42 -102 577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, pcrA (TIGR01073), PDDEXK_2 (pfam12784), RVT_N (pfam13655), T_den_put_tspse (TIGR01784), AlsT (COG1115)

Seq: JAATKZ010000001.1 Wolbachia pipientis isolate wAra wAra_Contig21, whole genome shotgun sequence (171449 bp)
Overview 1 RT 1: 19191-21655 bp 2 RT 2: 81292-86046 bp 3 RT 3: 136786-141788 bp Neighborhood of RT #1 [19191, 21655] RVT-GII group_II_RT_mat Neighborhood of RT #2 [81292, 86051] RVT-GII ANK ANK Ank_4 Ank_2 Neighborhood of RT #3 [136786, 141788] KOG1350 F1-ATPase_delta RVT-GII Feature: gene Location: 19191-19502 bp Feature: gene Location: 19762-19965 bp Feature: gene Location: 20136-20807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20391-20793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 91-20793 bp Feature: gene Location: 20970-21386 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 20976-21342 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 20976-213 42 bp Feature: gene Location: 21512-21655 bp Feature: gene Location: 81292-81510 bp Feature: gene Location: 81610-81813 bp Feature: gene Location: 81984-83297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82239-82929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8223 9-82929 bp Feature: gene Location: 83464-83700 bp Feature: gene Location: 83748-86051 bp Feature: domain Description: ANK Location: 84996-85371 bp Feature: domain Description: ANK Location: 84996-853 71 bp Feature: domain Description: ANK Location: 85392-85797 bp Feature: domain Description: ANK Location: 853 92-85797 bp Feature: domain Description: Ank_4 Location: 85845-85929 bp Feature: domain Description: Ank_4 Location: 85845-85929 bp Feature: domain Description: Ank_2 Location: 85959-86046 bp Feature: domain Description: Ank_2 Location: 85959-86046 bp Feature: gene Location: 136786-138237 bp Feature: domain Description: KOG1350 Location: 136807-138232 bp Feature: domain Description: KOG13 50 Location: 13 6807-13 823 2 bp Feature: gene Location: 138250-138594 bp Feature: domain Description: F1-ATPase_delta Location: 138262-138502 bp Feature: domain Description: F1-ATPase_delta Location: 13 8262-13 8502 bp Feature: gene Location: 139051-140364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139306-139996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 93 06-13 9996 bp Feature: gene Location: 140535-140738 bp Feature: gene Location: 140838-141788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), ANK (smart00248), Ank_4 (pfam13637), Ank_2 (pfam12796), KOG1350 (KOG1350, F0F1-type ATP synthase, beta subunit ), F1-ATPase_delta (cl29826)

Seq: JAATKZ010000006.1 Wolbachia pipientis isolate wAra wAra_Contig22, whole genome shotgun sequence (63428 bp)
Overview 1 RT 1: 14968-24729 bp Neighborhood of RT #1 [14968, 24746] DDE_Tnp_1_2 DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc DDE_Tnp_1 PDDEXK_2 RVT_N RVT-GII T_den_put_tspse Feature: gene Location: 14968-15309 bp Feature: domain Description: DDE_Tnp_1_2 Location: 15001-15295 bp Feature: domain Description: DDE_Tnp_1_2 Location: 15001-15295 bp Feature: gene Location: 15493-16008 bp Feature: domain Description: DDE_Tnp_1 Location: 15505-15766 bp Feature: domain Description: DDE_Tnp_1 Location: 15505-15766 bp Feature: gene Location: 16624-18417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16891-17680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16891-17680 bp Feature: domain Description: Intron_maturas2 Location: 17773-18034 bp Feature: domain Description: Intron_maturas2 Location: 17773-18034 bp Feature: domain Description: HNHc Note: nucleases Location: 18190-18370 bp Feature: domain Description: HNHc Note: nucleases Location: 18190-18370 bp Feature: gene Location: 18634-19074 bp Feature: domain Description: DDE_Tnp_1 Location: 18643-18832 bp Feature: domain Description: DDE_Tnp_1 Location: 1864 3-18832 bp Feature: gene Location: 19375-19653 bp Feature: gene Location: 21526-21969 bp Feature: domain Description: PDDEXK_2 Location: 21553-21772 bp Feature: domain Description: PDDEXK_2 Location: 21553-21772 bp Feature: gene Location: 22226-22369 bp Feature: gene Location: 22407-23504 bp Feature: domain Description: RVT_N Location: 22458-22695 bp Feature: domain Description: RVT_N Location: 224 58-22695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22746-23397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2274 6-23397 bp Feature: gene Location: 23607-23765 bp Feature: gene Location: 23949-24746 bp Feature: domain Description: T_den_put_tspse Location: 24075-24729 bp Feature: domain Description: T_den_put_tspse Location: 24 075-24 729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_2 (pfam13586), DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PDDEXK_2 (pfam12784), RVT_N (pfam13655), T_den_put_tspse (TIGR01784)

Seq: JAATKZ010000010.1 Wolbachia pipientis isolate wAra wAra_Contig25, whole genome shotgun sequence (277717 bp)
Overview 1 RT 1: 13728-16857 bp 2 RT 2: 46996-52247 bp 3 RT 3: 145607-149404 bp 4 RT 4: 231137-234224 bp 5 RT 5: 247165-250372 bp Neighborhood of RT #1 [13728, 16857] KOG2544 KOG2544 RVT-GII group_II_RT_mat Neighborhood of RT #2 [46996, 52312] gatA RVT-GII Virulence_RhuM Neighborhood of RT #3 [145607, 149404] BrkB RVT-GII SDR_c Neighborhood of RT #4 [231137, 234229] DUF4096 DDE_Tnp_1_2 RVT_N RVT-GII PDDEXK_2 Dimer_Tnp_Tn5 Neighborhood of RT #5 [247165, 250407] DHFR DHPS RVT-GII DUF1284 Feature: gene Location: 13728-14492 bp Feature: domain Description: KOG2544 Location: 13734-14145 bp Feature: domain Description: KOG25 44 Location: 13734-14145 bp Feature: domain Description: KOG2544 Location: 14217-14433 bp Feature: domain Description: KOG25 44 Location: 14217-14433 bp Feature: gene Location: 14578-14781 bp Feature: gene Location: 14952-15623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15207-15609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 207-15 609 bp Feature: gene Location: 15786-16265 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 15792-16158 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 15 792-1615 8 bp Feature: gene Location: 16441-16857 bp Feature: gene Location: 46996-47199 bp Feature: gene Location: 47578-49047 bp Feature: domain Description: gatA Location: 47626-49012 bp Feature: domain Description: gatA Location: 47626-49012 bp Feature: gene Location: 49409-50722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49664-50354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49664-5 035 4 bp Feature: gene Location: 50893-51096 bp Feature: gene Location: 51308-52312 bp Feature: domain Description: Virulence_RhuM Location: 51497-52247 bp Feature: domain Description: Virulence_RhuM Location: 5 1497-5 2247 bp Feature: gene Location: 145607-146353 bp Feature: domain Description: BrkB Location: 145628-146333 bp Feature: domain Description: BrkB Location: 145 628-146333 bp Feature: gene Location: 146453-146656 bp Feature: gene Location: 146828-148141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147083-147773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147083-147773 bp Feature: gene Location: 148327-149082 bp Feature: domain Description: SDR_c Location: 148378-149062 bp Feature: domain Description: SDR_c Location: 148378-149062 bp Feature: gene Location: 149207-149404 bp Feature: gene Location: 231137-231364 bp Feature: domain Description: DUF4096 Location: 231167-231344 bp Feature: domain Description: DUF4096 Location: 231167-231344 bp Feature: gene Location: 231582-231923 bp Feature: domain Description: DDE_Tnp_1_2 Location: 231615-231909 bp Feature: domain Description: DDE_Tnp_1_2 Location: 231615 -231909 bp Feature: gene Location: 232263-232979 bp Feature: domain Description: RVT_N Location: 232314-232560 bp Feature: domain Description: RVT_N Location: 232314-2325 60 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232602-232914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232602-232914 bp Feature: gene Location: 233460-233867 bp Feature: domain Description: PDDEXK_2 Location: 233538-233853 bp Feature: domain Description: PDDEXK_2 Location: 2335 38-23385 3 bp Feature: gene Location: 233975-234229 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 234068-234224 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 234068-234224 bp Feature: gene Location: 247165-247626 bp Feature: domain Description: DHFR Location: 247168-247582 bp Feature: domain Description: DHFR Location: 247168-2475 82 bp Feature: gene Location: 247641-248207 bp Feature: domain Description: DHPS Location: 247656-248184 bp Feature: domain Description: DHPS Location: 24765 6-248184 bp Feature: gene Location: 248301-249614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248556-249246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2485 5 6-249246 bp Feature: gene Location: 249785-249988 bp Feature: gene Location: 250120-250407 bp Feature: domain Description: DUF1284 Location: 250129-250372 bp Feature: domain Description: DUF1284 Location: 25 0129-25 0372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2544 (KOG2544, Dihydropteroate synthase/7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase/Dihydroneopterin aldolase ), RVT-GII, group_II_RT_mat (TIGR04416), gatA (TIGR00132), Virulence_RhuM (pfam13310), BrkB (COG1295), SDR_c (cd05233), DUF4096 (pfam13340), DDE_Tnp_1_2 (pfam13586), RVT_N (pfam13655)
PDDEXK_2 (pfam12784), Dimer_Tnp_Tn5 (pfam02281), DHFR (cl17279), DHPS (TIGR01496), DUF1284 (pfam06935)

Seq: JAATKZ010000002.1 Wolbachia pipientis isolate wAra wAra_scaffold10, whole genome shotgun sequence (8599 bp)
Overview 1 RT 1: 1-7299 bp Neighborhood of RT #1 [1, 8114] RVT-GII PDDEXK_2 RVT_N RVT-GII YkfC ANK Feature: gene Location: 1-630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256 -6 31 bp Feature: gene Location: 801-1004 bp Feature: gene Location: 1104-1739 bp Feature: gene Location: 3094-3537 bp Feature: domain Description: PDDEXK_2 Location: 3121-3340 bp Feature: domain Description: PDDEXK_2 Location: 3121-3340 bp Feature: gene Location: 3792-3935 bp Feature: gene Location: 3995-5512 bp Feature: domain Description: RVT_N Location: 4016-4259 bp Feature: domain Description: RVT_N Location: 4016 -4259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4304-4955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4304-4955 bp Feature: domain Description: YkfC Location: 4955-5288 bp Feature: domain Description: YkfC Location: 4955-5288 bp Feature: gene Location: 6286-7212 bp Feature: gene Location: 7053-8114 bp Feature: domain Description: ANK Location: 7092-7299 bp Feature: domain Description: ANK Location: 7092-7299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PDDEXK_2 (pfam12784), RVT_N (pfam13655), YkfC (COG3344), ANK (smart00248)

Seq: JAATKZ010000004.1 Wolbachia pipientis isolate wAra wAra_scaffold5, whole genome shotgun sequence (113159 bp)
Overview 1 RT 1: 66100-69066 bp 2 RT 2: 109353-112555 bp Neighborhood of RT #1 [66100, 69263] T_den_put_tspse RVT_N RVT-GII PDDEXK_2 Neighborhood of RT #2 [109353, 112752] T_den_put_tspse RVT_N RVT-GII YkfC PDDEXK_2 Feature: gene Location: 66100-66840 bp Feature: domain Description: T_den_put_tspse Location: 66226-66832 bp Feature: domain Description: T_den_put_tspse Location: 66226-66832 bp Feature: gene Location: 67024-67182 bp Feature: gene Location: 67285-68382 bp Feature: domain Description: RVT_N Location: 67336-67573 bp Feature: domain Description: RVT_N Location: 67 336-67 57 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67624-68275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67 624-6827 5 bp Feature: gene Location: 68420-68563 bp Feature: gene Location: 68820-69263 bp Feature: domain Description: PDDEXK_2 Location: 68847-69066 bp Feature: domain Description: PDDEXK_2 Location: 68847 -69066 bp Feature: gene Location: 109353-109502 bp Feature: gene Location: 109516-110337 bp Feature: domain Description: T_den_put_tspse Location: 109642-110317 bp Feature: domain Description: T_den_put_tspse Location: 109642-110317 bp Feature: gene Location: 110334-111851 bp Feature: domain Description: RVT_N Location: 110355-110598 bp Feature: domain Description: RVT_N Location: 110355-110598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110643-111294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110643-111294 bp Feature: domain Description: YkfC Location: 111294-111627 bp Feature: domain Description: YkfC Location: 111294-111627 bp Feature: gene Location: 112309-112752 bp Feature: domain Description: PDDEXK_2 Location: 112336-112555 bp Feature: domain Description: PDDEXK_2 Location: 112336-112555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T_den_put_tspse (TIGR01784), RVT_N (pfam13655), RVT-GII, PDDEXK_2 (pfam12784), YkfC (COG3344)

Seq: JAATKZ010000007.1 Wolbachia pipientis isolate wAra wAra_scaffold6, whole genome shotgun sequence (91535 bp)
Overview 1 RT 1: 24367-31267 bp 2 RT 2: 61609-65371 bp Neighborhood of RT #1 [24367, 31267] HTH_XRE T_den_put_tspse HTH_XRE DUF2802 HTH_XRE HTH_XRE RVT-GII Neighborhood of RT #2 [61609, 65371] PDDEXK_2 RVT_N RVT-GII T_den_put_tspse Feature: gene Location: 24367-25278 bp Feature: domain Description: HTH_XRE Location: 24415-24577 bp Feature: domain Description: HTH_XRE Location: 24415-24577 bp Feature: domain Description: T_den_put_tspse Location: 24730-24820 bp Feature: domain Description: T_den_put_tspse Location: 24730-248 20 bp Feature: domain Description: HTH_XRE Location: 24877-25042 bp Feature: domain Description: HTH_XRE Location: 248 77-25042 bp Feature: domain Description: DUF2802 Location: 25117-25273 bp Feature: domain Description: DUF28 02 Location: 25117-25273 bp Feature: gene Location: 25304-26212 bp Feature: domain Description: HTH_XRE Location: 25346-25517 bp Feature: domain Description: HTH_XRE Location: 25346-25517 bp Feature: domain Description: HTH_XRE Location: 25799-25970 bp Feature: domain Description: HTH_XRE Location: 25799-25970 bp Feature: gene Location: 26454-27767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26709-27399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26709-27399 bp Feature: gene Location: 27938-28141 bp Feature: gene Location: 28385-31267 bp Feature: gene Location: 61609-62052 bp Feature: domain Description: PDDEXK_2 Location: 61636-61855 bp Feature: domain Description: PDDEXK_2 Location: 61636-618 55 bp Feature: gene Location: 62309-62452 bp Feature: gene Location: 62490-63587 bp Feature: domain Description: RVT_N Location: 62541-62778 bp Feature: domain Description: RVT_N Location: 62541-62778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62829-63480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628 29-6348 0 bp Feature: gene Location: 64034-64831 bp Feature: domain Description: T_den_put_tspse Location: 64160-64811 bp Feature: domain Description: T_den_put_tspse Location: 64160-648 11 bp Feature: gene Location: 64832-65371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), T_den_put_tspse (TIGR01784), DUF2802 (pfam10975), RVT-GII, PDDEXK_2 (pfam12784), RVT_N (pfam13655)