myRT

myRT report for GCA_014137665.1_ASM1413766v1

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Seq: JACGZD010000001.1 Clostridium saccharobutylicum strain DJ006 Ga0423227_01, whole genome shotgun sequence (3898908 bp)
Overview 1 RT 1: 27359-31953 bp 2 RT 2: 2672820-2680730 bp 3 RT 3: 2795053-2803639 bp 4 RT 4: 3435057-3438219 bp Neighborhood of RT #1 [27359, 32255] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 DDE_Tnp_1 Neighborhood of RT #2 [2672820, 2680730] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #3 [2795053, 2803639] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Neighborhood of RT #4 [3435057, 3438257] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 27359-27625 bp Feature: domain Description: plantaricin Location: 27380-27623 bp Feature: domain Description: plantaricin Location: 27380-27623 bp Feature: gene Location: 27670-27936 bp Feature: domain Description: plantaricin Location: 27691-27934 bp Feature: domain Description: plantaricin Location: 27691 -27934 bp Feature: gene Location: 28010-29545 bp Feature: RT Description: RVT_N Location: 28082-28325 bp Feature: RT Description: RVT_N Location: 28082-28325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28370-29030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28370-29030 bp Feature: domain Description: GIIM Note: maturase Location: 29081-29318 bp Feature: domain Description: GIIM Note: maturase Location: 29081 -2931 8 bp Feature: domain Description: rve_2 Location: 29462-29537 bp Feature: domain Description: rve_2 Location: 29462-29537 bp Feature: gene Location: 30071-30928 bp Feature: domain Description: PHA02517 Location: 30359-30908 bp Feature: domain Description: PHA0251 7 Location: 30359-30908 bp Feature: gene Location: 30987-32255 bp Feature: domain Description: DDE_Tnp_1 Location: 31338-31953 bp Feature: domain Description: DDE_Tnp_1 Location: 31 338-31 953 bp Feature: gene Location: 2672820-2675387 bp Feature: domain Description: UvrD Location: 2673342-2674470 bp Feature: domain Description: UvrD Location: 2673342-2674470 bp Feature: domain Description: UvrD Location: 2674647-2674887 bp Feature: domain Description: UvrD Location: 2674647-2674887 bp Feature: gene Location: 2675673-2676680 bp Feature: gene Location: 2676892-2677971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2677063-2677621 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2677063-2677621 bp Feature: gene Location: 2678319-2679623 bp Feature: domain Description: Enpp Location: 2678337-2679573 bp Feature: domain Description: Enpp Location: 2678337-2679573 bp Feature: gene Location: 2680194-2680730 bp Feature: gene Location: 2795053-2795580 bp Feature: domain Description: Sig70_famx3 Location: 2795059-2795542 bp Feature: domain Description: Sig70_famx3 Location: 2795059-2795542 bp Feature: gene Location: 2795799-2796824 bp Feature: domain Description: DUF1835 Location: 2795814-2796183 bp Feature: domain Description: DUF1 835 Location: 279581 4-27961 83 bp Feature: domain Description: DUF3658 Location: 2796273-2796585 bp Feature: domain Description: DUF3658 Location: 2796273-2796585 bp Feature: gene Location: 2797412-2798917 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2798048-2798690 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2798048-2798690 bp Feature: gene Location: 2798914-2800722 bp Feature: gene Location: 2800724-2803639 bp Feature: gene Location: 3435057-3435191 bp Feature: gene Location: 3435659-3436066 bp Feature: gene Location: 3436500-3437138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3436836-3437019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3436836-343701 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3437022-3437127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3437022-34371 27 bp Feature: gene Location: 3437609-3437959 bp Feature: gene Location: 3438051-3438257 bp Feature: domain Description: DDE_Tnp_1 Location: 3438081-3438219 bp Feature: domain Description: DDE_Tnp_1 Location: 3438081 -343821 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), UvrD (COG0210), RVT-Retrons, Enpp (cd16018)
Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395)