myRT

myRT report for GCA_014137765.1_ASM1413776v1

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Seq: JACGZG010000001.1 Clostridium saccharobutylicum strain DJ147 Ga0423379_01, whole genome shotgun sequence (2790946 bp)
Overview 1 RT 1: 432693-440602 bp 2 RT 2: 554932-563518 bp 3 RT 3: 1194940-1198102 bp Neighborhood of RT #1 [432693, 440602] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #2 [554932, 563518] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Neighborhood of RT #3 [1194940, 1198140] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 432693-435260 bp Feature: domain Description: UvrD Location: 433215-434343 bp Feature: domain Description: UvrD Location: 43321 5-434343 bp Feature: domain Description: UvrD Location: 434520-434760 bp Feature: domain Description: UvrD Location: 434520-434760 bp Feature: gene Location: 435546-436553 bp Feature: gene Location: 436765-437889 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 436981-437539 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 436981 -437539 bp Feature: gene Location: 438191-439495 bp Feature: domain Description: Enpp Location: 438209-439445 bp Feature: domain Description: Enpp Location: 438209-439445 bp Feature: gene Location: 440066-440602 bp Feature: gene Location: 554932-555459 bp Feature: domain Description: Sig70_famx3 Location: 554938-555421 bp Feature: domain Description: Sig70_famx3 Location: 554938-555421 bp Feature: gene Location: 555678-556703 bp Feature: domain Description: DUF1835 Location: 555693-556062 bp Feature: domain Description: DUF1 835 Location: 555693-556062 bp Feature: domain Description: DUF3658 Location: 556152-556464 bp Feature: domain Description: DUF3658 Location: 5561 52-556464 bp Feature: gene Location: 557291-558796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 557927-558569 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 557927-558569 bp Feature: gene Location: 558793-560601 bp Feature: gene Location: 560603-563518 bp Feature: gene Location: 1194940-1195074 bp Feature: gene Location: 1195542-1195949 bp Feature: gene Location: 1196383-1197021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196719-1196902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9671 9-1 1 96902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196905-1197010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 96905-1 1 9701 0 bp Feature: gene Location: 1197492-1197842 bp Feature: gene Location: 1197934-1198140 bp Feature: domain Description: DDE_Tnp_1 Location: 1197964-1198102 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 97964-1 1 981 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018), Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JACGZG010000003.1 Clostridium saccharobutylicum strain DJ147 Ga0423379_03, whole genome shotgun sequence (144011 bp)
Overview 1 RT 1: 109659-114553 bp Neighborhood of RT #1 [109659, 114555] DDE_Tnp_1 PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Feature: gene Location: 109659-110927 bp Feature: domain Description: DDE_Tnp_1 Location: 110010-110625 bp Feature: domain Description: DDE_Tnp_1 Location: 110010-11062 5 bp Feature: gene Location: 110986-111843 bp Feature: domain Description: PHA02517 Location: 111274-111823 bp Feature: domain Description: PHA02 517 Location: 1112 74-11182 3 bp Feature: gene Location: 112369-113904 bp Feature: RT Description: RVT_N Location: 112441-112684 bp Feature: RT Description: RVT_N Location: 112 441-112 684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112729-113389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 72 9-113389 bp Feature: domain Description: GIIM Note: maturase Location: 113440-113677 bp Feature: domain Description: GIIM Note: maturase Location: 113440-113677 bp Feature: domain Description: rve_2 Location: 113821-113896 bp Feature: domain Description: rve_2 Location: 11382 1-113896 bp Feature: gene Location: 113978-114244 bp Feature: domain Description: plantaricin Location: 113999-114242 bp Feature: domain Description: plantaricin Location: 113999-1142 42 bp Feature: gene Location: 114289-114555 bp Feature: domain Description: plantaricin Location: 114310-114553 bp Feature: domain Description: plantaricin Location: 114310-114553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), plantaricin (NF000539)