myRT

myRT report for GCA_014137775.1_ASM1413777v1

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Seq: JACGZF010000001.1 Clostridium saccharobutylicum strain DJ101 Ga0423258_01, whole genome shotgun sequence (5110067 bp)
Overview 1 RT 1: 23264-27858 bp 2 RT 2: 2668665-2676574 bp 3 RT 3: 2790894-2799612 bp 4 RT 4: 3430889-3434051 bp Neighborhood of RT #1 [23264, 28160] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 DDE_Tnp_1 Neighborhood of RT #2 [2668665, 2676574] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #3 [2790894, 2799612] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Neighborhood of RT #4 [3430889, 3434089] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 23264-23530 bp Feature: domain Description: plantaricin Location: 23285-23528 bp Feature: domain Description: plantaricin Location: 23285-23528 bp Feature: gene Location: 23575-23841 bp Feature: domain Description: plantaricin Location: 23596-23839 bp Feature: domain Description: plantaricin Location: 23596-23839 bp Feature: gene Location: 23915-25450 bp Feature: RT Description: RVT_N Location: 23987-24230 bp Feature: RT Description: RVT_N Location: 23987-24230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24275-24935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24275-24935 bp Feature: domain Description: GIIM Note: maturase Location: 24986-25223 bp Feature: domain Description: GIIM Note: maturase Location: 24986-25223 bp Feature: domain Description: rve_2 Location: 25367-25442 bp Feature: domain Description: rve_2 Location: 25367-25442 bp Feature: gene Location: 25976-26833 bp Feature: domain Description: PHA02517 Location: 26264-26813 bp Feature: domain Description: PHA0251 7 Location: 26264-2681 3 bp Feature: gene Location: 26892-28160 bp Feature: domain Description: DDE_Tnp_1 Location: 27243-27858 bp Feature: domain Description: DDE_Tnp_1 Location: 27243-27858 bp Feature: gene Location: 2668665-2671232 bp Feature: domain Description: UvrD Location: 2669187-2670315 bp Feature: domain Description: UvrD Location: 26691 87-267031 5 bp Feature: domain Description: UvrD Location: 2670492-2670732 bp Feature: domain Description: UvrD Location: 2670492-2670732 bp Feature: gene Location: 2671518-2672525 bp Feature: gene Location: 2672737-2673861 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2672953-2673511 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2672953-267351 1 bp Feature: gene Location: 2674163-2675467 bp Feature: domain Description: Enpp Location: 2674181-2675417 bp Feature: domain Description: Enpp Location: 26741 81 -267541 7 bp Feature: gene Location: 2676038-2676574 bp Feature: gene Location: 2790894-2791421 bp Feature: domain Description: Sig70_famx3 Location: 2790900-2791383 bp Feature: domain Description: Sig70_famx3 Location: 2790900-2791 383 bp Feature: gene Location: 2791640-2792665 bp Feature: domain Description: DUF1835 Location: 2791655-2792024 bp Feature: domain Description: DUF1 835 Location: 2791 655-2792024 bp Feature: domain Description: DUF3658 Location: 2792114-2792426 bp Feature: domain Description: DUF3658 Location: 27921 1 4-2792426 bp Feature: gene Location: 2793253-2794758 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2793889-2794531 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2793889-2794531 bp Feature: gene Location: 2794755-2796563 bp Feature: gene Location: 2796565-2799612 bp Feature: gene Location: 3430889-3431023 bp Feature: gene Location: 3431491-3431898 bp Feature: gene Location: 3432332-3432970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3432668-3432851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3432668-3432851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3432854-3432959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3432854-3432959 bp Feature: gene Location: 3433441-3433791 bp Feature: gene Location: 3433883-3434089 bp Feature: domain Description: DDE_Tnp_1 Location: 3433913-3434051 bp Feature: domain Description: DDE_Tnp_1 Location: 343391 3-3434051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), UvrD (COG0210), RVT-Retrons, Enpp (cd16018)
Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395)