myRT

myRT report for GCA_014137875.1_ASM1413787v1

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Seq: JACGZB010000007.1 Clostridium saccharobutylicum strain DJ018 Ga0419097_07, whole genome shotgun sequence (227925 bp)
Overview 1 RT 1: 142455-151135 bp Neighborhood of RT #1 [142455, 151173] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Feature: gene Location: 142455-145502 bp Feature: gene Location: 145504-147312 bp Feature: gene Location: 147309-148814 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147945-148587 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 47945-1 48587 bp Feature: gene Location: 149402-150427 bp Feature: domain Description: DUF1835 Location: 149417-149786 bp Feature: domain Description: DUF1 835 Location: 1 4941 7-1 49786 bp Feature: domain Description: DUF3658 Location: 149876-150188 bp Feature: domain Description: DUF3658 Location: 1 49876-1 501 88 bp Feature: gene Location: 150646-151173 bp Feature: domain Description: Sig70_famx3 Location: 150652-151135 bp Feature: domain Description: Sig70_famx3 Location: 1 50652-1 51 1 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954)

Seq: JACGZB010000017.1 Clostridium saccharobutylicum strain DJ018 Ga0419097_17, whole genome shotgun sequence (81698 bp)
Overview 1 RT 1: 55764-58926 bp Neighborhood of RT #1 [55764, 58964] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 55764-55898 bp Feature: gene Location: 56366-56773 bp Feature: gene Location: 57207-57845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57543-57726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57543-5772 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57729-57834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5772 9-57834 bp Feature: gene Location: 58316-58666 bp Feature: gene Location: 58758-58964 bp Feature: domain Description: DDE_Tnp_1 Location: 58788-58926 bp Feature: domain Description: DDE_Tnp_1 Location: 58788-5892 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JACGZB010000035.1 Clostridium saccharobutylicum strain DJ018 Ga0419097_35, whole genome shotgun sequence (46823 bp)
Overview 1 RT 1: 2664-10573 bp Neighborhood of RT #1 [2664, 10573] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 2664-5231 bp Feature: domain Description: UvrD Location: 3186-4314 bp Feature: domain Description: UvrD Location: 3 186-43 14 bp Feature: domain Description: UvrD Location: 4491-4731 bp Feature: domain Description: UvrD Location: 4491-473 1 bp Feature: gene Location: 5517-6524 bp Feature: gene Location: 6736-7860 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6952-7510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6952-7510 bp Feature: gene Location: 8162-9466 bp Feature: domain Description: Enpp Location: 8180-9416 bp Feature: domain Description: Enpp Location: 8180-9416 bp Feature: gene Location: 10037-10573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JACGZB010000039.1 Clostridium saccharobutylicum strain DJ018 Ga0419097_39, whole genome shotgun sequence (26014 bp)
Overview 1 RT 1: 22404-25953 bp Neighborhood of RT #1 [22404, 25973] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 Feature: gene Location: 22404-22670 bp Feature: domain Description: plantaricin Location: 22425-22668 bp Feature: domain Description: plantaricin Location: 224 25-22668 bp Feature: gene Location: 22715-22981 bp Feature: domain Description: plantaricin Location: 22736-22979 bp Feature: domain Description: plantaricin Location: 22736-22979 bp Feature: gene Location: 23055-24590 bp Feature: RT Description: RVT_N Location: 23127-23370 bp Feature: RT Description: RVT_N Location: 23127-23370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23415-24075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234 15-24 075 bp Feature: domain Description: GIIM Note: maturase Location: 24126-24363 bp Feature: domain Description: GIIM Note: maturase Location: 24 126-24 363 bp Feature: domain Description: rve_2 Location: 24507-24582 bp Feature: domain Description: rve_2 Location: 24 507-24 582 bp Feature: gene Location: 25116-25973 bp Feature: domain Description: PHA02517 Location: 25404-25953 bp Feature: domain Description: PHA02517 Location: 254 04 -25953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)