myRT

myRT report for GCA_014145775.1_ASM1414577v1

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Seq: JACHQW010000001.1 Pseudomonas aeruginosa strain LVP29 newlvp05_contig_1, whole genome shotgun sequence (2571039 bp)
Overview 1 RT 1: 92324-97940 bp Neighborhood of RT #1 [92324, 98095] TerD_like TerD_like DDE_Tnp_1 RVT-GII GIIM IS5 Tra5 Feature: gene Location: 92324-93574 bp Feature: domain Description: TerD_like Location: 92402-92834 bp Feature: domain Description: TerD_like Location: 92402-92834 bp Feature: domain Description: TerD_like Location: 92987-93458 bp Feature: domain Description: TerD_like Location: 92987-93458 bp Feature: gene Location: 94411-94869 bp Feature: domain Description: DDE_Tnp_1 Location: 94414-94819 bp Feature: domain Description: DDE_Tnp_1 Location: 9441 4-9481 9 bp Feature: gene Location: 94941-96209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95154-95811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 54-9581 1 bp Feature: domain Description: GIIM Note: maturase Location: 95889-96111 bp Feature: domain Description: GIIM Note: maturase Location: 95889-961 1 1 bp Feature: gene Location: 96702-97241 bp Feature: domain Description: IS5 Location: 96891-97218 bp Feature: domain Description: IS5 Location: 96891 -9721 8 bp Feature: gene Location: 97412-98095 bp Feature: domain Description: Tra5 Location: 97442-97940 bp Feature: domain Description: Tra5 Location: 97442-97940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TerD_like (cl18957), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), IS5 (COG3039), Tra5 (COG2801)

Seq: JACHQW010000002.1 Pseudomonas aeruginosa strain LVP29 newlvp05_contig_2, whole genome shotgun sequence (1342626 bp)
Overview 1 RT 1: 770583-778221 bp 2 RT 2: 1266353-1270731 bp Neighborhood of RT #1 [770583, 778295] NERD COG3177 RVT_N RVT-GII GIIM EAL sensory_box sensory_box sensory_box GGDEF Neighborhood of RT #2 [1266353, 1270731] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 770583-770918 bp Feature: domain Description: NERD Location: 770682-770853 bp Feature: domain Description: NERD Location: 770682 -770853 bp Feature: gene Location: 771011-772132 bp Feature: domain Description: COG3177 Location: 771029-772121 bp Feature: domain Description: COG3177 Location: 77102 9-772 12 1 bp Feature: gene Location: 773151-774536 bp Feature: RT Description: RVT_N Location: 773208-773448 bp Feature: RT Description: RVT_N Location: 7732 08-773448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773496-774132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773496-774132 bp Feature: domain Description: GIIM Note: maturase Location: 774186-774417 bp Feature: domain Description: GIIM Note: maturase Location: 774186-774417 bp Feature: gene Location: 775321-776511 bp Feature: domain Description: EAL Location: 775438-776152 bp Feature: domain Description: EAL Location: 775438-776152 bp Feature: gene Location: 776616-778295 bp Feature: domain Description: sensory_box Location: 777090-777228 bp Feature: domain Description: sensory_box Location: 777090-7772 2 8 bp Feature: domain Description: sensory_box Location: 777240-777606 bp Feature: domain Description: sensory_box Location: 7772 40-777606 bp Feature: domain Description: sensory_box Location: 777621-777972 bp Feature: domain Description: sensory_box Location: 77762 1-777972 bp Feature: domain Description: GGDEF Location: 777978-778221 bp Feature: domain Description: GGDEF Location: 777978-7782 2 1 bp Feature: gene Location: 1266353-1267180 bp Feature: domain Description: ABC_phnC Location: 1266383-1267097 bp Feature: domain Description: ABC_phnC Location: 12 66383-12 67097 bp Feature: gene Location: 1267523-1268164 bp Feature: domain Description: DUF772 Location: 1267673-1267868 bp Feature: domain Description: DUF772 Location: 12 67673-12 67868 bp Feature: gene Location: 1268553-1269821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1268766-1269423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 68766-12 6942 3 bp Feature: domain Description: GIIM Note: maturase Location: 1269501-1269723 bp Feature: domain Description: GIIM Note: maturase Location: 12 69501-12 6972 3 bp Feature: gene Location: 1269971-1270369 bp Feature: gene Location: 1270552-1270731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), EAL (smart00052), sensory_box (TIGR00229), GGDEF (TIGR00254), ABC_phnC (TIGR02315), DUF772 (pfam05598)

Seq: JACHQW010000005.1 Pseudomonas aeruginosa strain LVP29 newlvp05_contig_5, whole genome shotgun sequence (654694 bp)
Overview 1 RT 1: 473877-480066 bp Neighborhood of RT #1 [473877, 480077] GIIM HNHc RVT-GII RVT_N RVT-GII YkfC HNHc rpmG RpmB Feature: gene Location: 473877-474020 bp Feature: gene Location: 474081-474719 bp Feature: domain Description: GIIM Note: maturase Location: 474090-474288 bp Feature: domain Description: GIIM Note: maturase Location: 474090-474288 bp Feature: domain Description: HNHc Note: nucleases Location: 474501-474672 bp Feature: domain Description: HNHc Note: nucleases Location: 474501-474672 bp Feature: gene Location: 474725-475525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474818-475454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474818-475454 bp Feature: gene Location: 476915-478612 bp Feature: RT Description: RVT_N Location: 476972-477215 bp Feature: RT Description: RVT_N Location: 476972-477215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477260-477896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477260-477896 bp Feature: domain Description: YkfC Location: 478118-478253 bp Feature: domain Description: YkfC Location: 478118-478253 bp Feature: domain Description: HNHc Note: nucleases Location: 478400-478565 bp Feature: domain Description: HNHc Note: nucleases Location: 478400-478565 bp Feature: gene Location: 479674-479829 bp Feature: domain Description: rpmG Location: 479677-479821 bp Feature: domain Description: rpmG Location: 479677-479821 bp Feature: gene Location: 479841-480077 bp Feature: domain Description: RpmB Location: 479844-480066 bp Feature: domain Description: RpmB Location: 479844-480066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), RVT-GII, RVT_N (pfam13655), YkfC (COG3344), rpmG (PRK00595), RpmB (COG0227)