myRT

myRT report for GCA_014155055.1_ASM1415505v1

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Seq: JAALAB010000003.1 Escherichia coli strain ATM463 ATM463_3, whole genome shotgun sequence (199809 bp)
Overview 1 RT 1: 53491-56319 bp 2 RT 2: 185750-189047 bp Neighborhood of RT #1 [53491, 56330] COG3547 RVT-GII GIIM InsE Neighborhood of RT #2 [185750, 189115] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 53491-53976 bp Feature: domain Description: COG3547 Location: 53509-53962 bp Feature: domain Description: COG3547 Location: 53509-53962 bp Feature: gene Location: 54072-54239 bp Feature: gene Location: 54265-55482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54451-55105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54451 -551 05 bp Feature: domain Description: GIIM Note: maturase Location: 55183-55405 bp Feature: domain Description: GIIM Note: maturase Location: 551 83-55405 bp Feature: gene Location: 55493-55912 bp Feature: gene Location: 56028-56330 bp Feature: domain Description: InsE Location: 56037-56319 bp Feature: domain Description: InsE Location: 56037-5631 9 bp Feature: gene Location: 185750-186781 bp Feature: domain Description: HTH_23 Location: 185828-185969 bp Feature: domain Description: HTH_23 Location: 1 85828-1 85969 bp Feature: domain Description: HTH_33 Location: 186074-186221 bp Feature: domain Description: HTH_33 Location: 1 86074-1 86221 bp Feature: domain Description: DDE_3 Location: 186278-186698 bp Feature: domain Description: DDE_3 Location: 1 86278-1 86698 bp Feature: gene Location: 186925-187593 bp Feature: domain Description: HTH_23 Location: 187033-187120 bp Feature: domain Description: HTH_23 Location: 1 87033-1 871 20 bp Feature: domain Description: InsE Location: 187249-187444 bp Feature: domain Description: InsE Location: 1 87249-1 87444 bp Feature: gene Location: 187687-187947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187690-187921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 87690-1 87921 bp Feature: gene Location: 187957-188385 bp Feature: gene Location: 188399-189115 bp Feature: domain Description: DDE_Tnp_1 Location: 188405-189047 bp Feature: domain Description: DDE_Tnp_1 Location: 1 88405-1 89047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), DDE_Tnp_1 (pfam01609)