myRT

myRT report for GCA_014155105.1_ASM1415510v1

Download annotations/find similar RTs

Seq: JAALAC010000001.1 Escherichia coli strain ATM460 ATM460_1, whole genome shotgun sequence (279065 bp)
Overview 1 RT 1: 15965-19334 bp 2 RT 2: 102779-109912 bp 3 RT 3: 133129-138609 bp Neighborhood of RT #1 [15965, 19348] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [102779, 110061] RVT_N RVT-GII GIIM HNHc Antirestrict DDE_Tnp_1 RVT-GII RVT-GII DDE_Tnp_1 HTH_23 InsE Neighborhood of RT #3 [133129, 138611] PRK09409 Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 15965-16654 bp Feature: domain Description: PHA02517 Location: 15971-16652 bp Feature: domain Description: PHA0251 7 Location: 1 5971 -1 6652 bp Feature: gene Location: 16748-16879 bp Feature: domain Description: DDE_Tnp_IS66 Location: 16760-16853 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 6760-1 6853 bp Feature: gene Location: 17357-18574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17543-18197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7543-1 81 97 bp Feature: domain Description: GIIM Note: maturase Location: 18275-18497 bp Feature: domain Description: GIIM Note: maturase Location: 1 8275-1 8497 bp Feature: gene Location: 18690-18836 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18702-18813 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 8702-1 881 3 bp Feature: gene Location: 18863-19348 bp Feature: domain Description: COG3547 Location: 18881-19334 bp Feature: domain Description: COG3547 Location: 1 8881 -1 9334 bp Feature: gene Location: 102779-103045 bp Feature: gene Location: 103281-103415 bp Feature: gene Location: 103572-105245 bp Feature: domain Description: RVT_N Location: 103620-103863 bp Feature: domain Description: RVT_N Location: 1 03620-1 03863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103908-104553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 03908-1 04553 bp Feature: domain Description: GIIM Note: maturase Location: 104607-104838 bp Feature: domain Description: GIIM Note: maturase Location: 1 04607-1 04838 bp Feature: domain Description: HNHc Note: nucleases Location: 105039-105198 bp Feature: domain Description: HNHc Note: nucleases Location: 1 05039-1 051 98 bp Feature: gene Location: 105278-105472 bp Feature: gene Location: 105557-105751 bp Feature: gene Location: 106267-106692 bp Feature: domain Description: Antirestrict Location: 106402-106690 bp Feature: domain Description: Antirestrict Location: 1 06402-1 06690 bp Feature: gene Location: 106711-107364 bp Feature: domain Description: DDE_Tnp_1 Location: 106717-107332 bp Feature: domain Description: DDE_Tnp_1 Location: 1 0671 7-1 07332 bp Feature: gene Location: 107390-107593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107498-107588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07498-1 07588 bp Feature: gene Location: 107654-108010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107663-107984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07663-1 07984 bp Feature: gene Location: 108073-109407 bp Feature: domain Description: DDE_Tnp_1 Location: 108511-109123 bp Feature: domain Description: DDE_Tnp_1 Location: 1 0851 1 -1 091 23 bp Feature: gene Location: 109408-110061 bp Feature: domain Description: HTH_23 Location: 109501-109588 bp Feature: domain Description: HTH_23 Location: 1 09501 -1 09588 bp Feature: domain Description: InsE Location: 109717-109912 bp Feature: domain Description: InsE Location: 1 0971 7-1 0991 2 bp Feature: gene Location: 133129-134034 bp Feature: domain Description: PRK09409 Location: 133132-134032 bp Feature: domain Description: PRK09409 Location: 1 331 32-1 34032 bp Feature: gene Location: 134298-134519 bp Feature: domain Description: Tra5 Location: 134310-134502 bp Feature: domain Description: Tra5 Location: 1 3431 0-1 34502 bp Feature: gene Location: 134532-135659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134832-135489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34832-1 35489 bp Feature: gene Location: 135958-136485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135964-136108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35964-1 361 08 bp Feature: domain Description: GIIM Note: maturase Location: 136192-136408 bp Feature: domain Description: GIIM Note: maturase Location: 1 361 92-1 36408 bp Feature: gene Location: 136838-137080 bp Feature: gene Location: 136992-138611 bp Feature: domain Description: ushA Location: 137007-138609 bp Feature: domain Description: ushA Location: 1 37007-1 38609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT_N (pfam13655), HNHc (smart00507), Antirestrict (pfam03230), DDE_Tnp_1 (pfam01609)
HTH_23 (pfam13384), InsE (COG2963), PRK09409 (IS2 transposase TnpB; Reviewed), Tra5 (COG2801), ushA (PRK09558)

Seq: JAALAC010000002.1 Escherichia coli strain ATM460 ATM460_2, whole genome shotgun sequence (4678414 bp)
Overview 1 RT 1: 1675160-1679040 bp 2 RT 2: 2395241-2399543 bp Neighborhood of RT #1 [1675160, 1679045] dut slmA RVT-Retrons pyrE rph Neighborhood of RT #2 [2395241, 2399560] RVT-UG5 nitrilase Psu Feature: gene Location: 1675160-1675618 bp Feature: domain Description: dut Location: 1675166-1675613 bp Feature: domain Description: dut Location: 1675166-1675613 bp Feature: gene Location: 1675725-1676321 bp Feature: domain Description: slmA Location: 1675731-1676307 bp Feature: domain Description: slmA Location: 1675731-1676307 bp Feature: gene Location: 1676367-1677326 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1676502-1677051 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1676502 -1677051 bp Feature: gene Location: 1677622-1678278 bp Feature: domain Description: pyrE Location: 1677640-1678273 bp Feature: domain Description: pyrE Location: 1677640-16782 73 bp Feature: gene Location: 1678329-1679045 bp Feature: domain Description: rph Location: 1678332-1679040 bp Feature: domain Description: rph Location: 1678332 -1679040 bp Feature: gene Location: 2395241-2395507 bp Feature: gene Location: 2395716-2395904 bp Feature: gene Location: 2396076-2398115 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2396082-2396241 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 396082 -2 3962 41 bp Feature: domain Description: nitrilase Location: 2397450-2398035 bp Feature: domain Description: nitrilase Location: 2 397450-2 398035 bp Feature: gene Location: 2398112-2398801 bp Feature: gene Location: 2399003-2399560 bp Feature: domain Description: Psu Location: 2399021-2399543 bp Feature: domain Description: Psu Location: 2 39902 1-2 399543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), RVT-UG5, nitrilase (cl11424), Psu (pfam07455)