myRT

myRT report for GCA_014156515.1_ASM1415651v1

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Seq: RQWT01000101.1 Klebsiella pneumoniae strain CRKP4 NODE_109_length_585_cov_0.0240175, whole genome shotgun sequence (585 bp)
Overview 1 RT 1: 31-537 bp Neighborhood of RT #1 [31, 584] RVT-UNC Feature: gene Location: 31-267 bp Feature: gene Location: 411-584 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 417-537 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 41 7-537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1/RVT-GII/RVT-DGRs/RVT-CRISPR(RVT-UNC)

Seq: RQWT01000204.1 Klebsiella pneumoniae strain CRKP4 NODE_243_length_391_cov_0.348485, whole genome shotgun sequence (391 bp)
Overview 1 RT 1: 2-386 bp Neighborhood of RT #1 [2, 388] RVT-GII Feature: gene Location: 2-388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56-386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56-386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RQWT01000272.1 Klebsiella pneumoniae strain CRKP4 NODE_334_length_334_cov_0.275362, whole genome shotgun sequence (334 bp)
Overview 1 RT 1: 1-274 bp Neighborhood of RT #1 [1, 333] RVT-GII Feature: gene Location: 1-333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 -274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RQWT01000033.1 Klebsiella pneumoniae strain CRKP4 NODE_33_length_54820_cov_41.6218, whole genome shotgun sequence (54820 bp)
Overview 1 RT 1: 43781-47384 bp Neighborhood of RT #1 [43781, 47509] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 43781-44038 bp Feature: gene Location: 44069-44344 bp Feature: gene Location: 44918-46585 bp Feature: domain Description: RVT_N Location: 44966-45203 bp Feature: domain Description: RVT_N Location: 4 4 966-4 5203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45254-45896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 5254 -4 5896 bp Feature: domain Description: GIIM Note: maturase Location: 45947-46181 bp Feature: domain Description: GIIM Note: maturase Location: 4 594 7-4 6181 bp Feature: domain Description: HNHc Note: nucleases Location: 46391-46550 bp Feature: domain Description: HNHc Note: nucleases Location: 4 6391-4 6550 bp Feature: gene Location: 46899-47090 bp Feature: gene Location: 47087-47509 bp Feature: domain Description: DUF1380 Location: 47090-47384 bp Feature: domain Description: DUF1380 Location: 4 7090-4 7384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: RQWT01000036.1 Klebsiella pneumoniae strain CRKP4 NODE_36_length_41971_cov_23.3907, whole genome shotgun sequence (41971 bp)
Overview 1 RT 1: 17508-23845 bp Neighborhood of RT #1 [17508, 23845] STKc_PknB_like RVT-Retrons AAA_15 Feature: gene Location: 17508-18611 bp Feature: domain Description: STKc_PknB_like Location: 17640-18081 bp Feature: domain Description: STKc_PknB_like Location: 17640-18081 bp Feature: gene Location: 18681-18917 bp Feature: gene Location: 19170-20270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19350-19884 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1935 0-19884 bp Feature: gene Location: 20385-22631 bp Feature: domain Description: AAA_15 Location: 20388-21396 bp Feature: domain Description: AAA_15 Location: 20388-21396 bp Feature: gene Location: 23540-23845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175)

Seq: RQWT01000073.1 Klebsiella pneumoniae strain CRKP4 NODE_73_length_1892_cov_205.912, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 347-1442 bp Neighborhood of RT #1 [347, 1834] RVT-GII Feature: gene Location: 347-1834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII