myRT

myRT report for GCA_014163655.1_ASM1416365v1

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Seq: JACJDR010000013.1 Pseudoalteromonas sp. SR45-1 NODE_13_length_149681_cov_8.4, whole genome shotgun sequence (149681 bp)
Overview 1 RT 1: 87534-93349 bp Neighborhood of RT #1 [87534, 93369] VOC_like RVT_N RVT-GII GIIM HNH groEL Feature: gene Location: 87534-87965 bp Feature: domain Description: VOC_like Location: 87567-87954 bp Feature: domain Description: VOC_like Location: 87567-87954 bp Feature: gene Location: 88196-88339 bp Feature: gene Location: 88931-90589 bp Feature: domain Description: RVT_N Location: 88982-89225 bp Feature: domain Description: RVT_N Location: 88982-89225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89270-89915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89270-8991 5 bp Feature: domain Description: GIIM Note: maturase Location: 89969-90203 bp Feature: domain Description: GIIM Note: maturase Location: 89969-90203 bp Feature: domain Description: HNH Note: nucleases Location: 90443-90575 bp Feature: domain Description: HNH Note: nucleases Location: 90443-90575 bp Feature: gene Location: 91188-91388 bp Feature: gene Location: 91720-93369 bp Feature: domain Description: groEL Location: 91726-93349 bp Feature: domain Description: groEL Location: 91 726-93349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VOC_like (cd16355), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), groEL (PRK12852)

Seq: JACJDR010000003.1 Pseudoalteromonas sp. SR45-1 NODE_3_length_293090_cov_7.8, whole genome shotgun sequence (293090 bp)
Overview 1 RT 1: 119374-123532 bp Neighborhood of RT #1 [119374, 123532] sbcB RVT-Retrons CSP_CDS Feature: gene Location: 119374-120819 bp Feature: domain Description: sbcB Note: exonuclease Location: 119389-120814 bp Feature: domain Description: sbcB Note: exonuclease Location: 119389-12 0814 bp Feature: gene Location: 121299-121505 bp Feature: gene Location: 121543-122730 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 121690-122260 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 1690-12 2 2 60 bp Feature: gene Location: 122731-122940 bp Feature: domain Description: CSP_CDS Location: 122746-122932 bp Feature: domain Description: CSP_CDS Location: 12 2 746-12 2 932 bp Feature: gene Location: 123113-123532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sbcB (PRK11779), RVT-Retrons, CSP_CDS (cd04458)

Seq: JACJDR010000005.1 Pseudoalteromonas sp. SR45-1 NODE_5_length_232298_cov_8.0, whole genome shotgun sequence (232298 bp)
Overview 1 RT 1: 49674-52768 bp Neighborhood of RT #1 [49674, 52779] RVT-UG17 PRK12513 Feature: gene Location: 49674-49826 bp Feature: gene Location: 49847-50098 bp Feature: gene Location: 50145-51464 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 50370-50952 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 503 70-50952 bp Feature: gene Location: 51561-52184 bp Feature: gene Location: 52171-52779 bp Feature: domain Description: PRK12513 Location: 52219-52768 bp Feature: domain Description: PRK12513 Location: 52219-52768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, PRK12513 (RNA polymerase sigma factor; Provisional)