myRT

myRT report for GCA_014164215.1_ASM1416421v1

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Seq: JACJEU010000003.1 Shewanella sp. SG44-2 NODE_3_length_281225_cov_9.2, whole genome shotgun sequence (281225 bp)
Overview 1 RT 1: 272008-280941 bp Neighborhood of RT #1 [272008, 281105] HsdM_N N6_Mtase PRK09737 PRK09737 RVT-UG1 nitrilase_Rim1_like DEXXQc_Upf1-like Feature: gene Location: 272008-273570 bp Feature: domain Description: HsdM_N Location: 272029-272374 bp Feature: domain Description: HsdM_N Location: 272029-272374 bp Feature: domain Description: N6_Mtase Location: 272404-273373 bp Feature: domain Description: N6_Mtase Location: 272404-273373 bp Feature: gene Location: 273567-275126 bp Feature: domain Description: PRK09737 Location: 273585-274191 bp Feature: domain Description: PRK09737 Location: 273585-2741 91 bp Feature: domain Description: PRK09737 Location: 274341-275091 bp Feature: domain Description: PRK09737 Location: 274341 -275091 bp Feature: gene Location: 275129-278842 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 275750-276248 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 275750-276248 bp Feature: domain Description: nitrilase_Rim1_like Location: 278237-278549 bp Feature: domain Description: nitrilase_Rim1 _like Location: 278237-278549 bp Feature: gene Location: 278839-279315 bp Feature: gene Location: 279576-281105 bp Feature: domain Description: DEXXQc_Upf1-like Location: 280677-280941 bp Feature: domain Description: DEXXQc_Upf1 -like Location: 280677-280941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM_N (pfam12161), N6_Mtase (pfam02384), PRK09737 (type I restriction-modification system specificity subunit), RVT-UG1, nitrilase_Rim1_like (cd07574), DEXXQc_Upf1-like (cd17934)

Seq: JACJEU010000065.1 Shewanella sp. SG44-2 NODE_65_length_1377_cov_25.9, whole genome shotgun sequence (1377 bp)
Overview 1 RT 1: 3-1095 bp Neighborhood of RT #1 [3, 1289] RVT-GII GIIM Feature: gene Location: 3-1289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 5-843 bp Feature: domain Description: GIIM Note: maturase Location: 891-1095 bp Feature: domain Description: GIIM Note: maturase Location: 891-1095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACJEU010000008.1 Shewanella sp. SG44-2 NODE_8_length_219041_cov_8.7, whole genome shotgun sequence (219041 bp)
Overview 1 RT 1: 137542-142243 bp Neighborhood of RT #1 [137542, 142245] INT_C_like_1 RVT-Retrons PRK09974 TAS_TAS_TAS_TIGR02293 Feature: gene Location: 137542-138873 bp Feature: domain Description: INT_C_like_1 Location: 138283-138805 bp Feature: domain Description: INT_C_like_1 Location: 13 8283 -13 8805 bp Feature: gene Location: 139127-140098 bp Feature: gene Location: 140095-141042 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 140197-140791 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 140197-140791 bp Feature: gene Location: 141283-141645 bp Feature: domain Description: PRK09974 Location: 141496-141640 bp Feature: domain Description: PRK09974 Location: 141496-141640 bp Feature: gene Location: 141835-142245 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 141877-142243 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 141877-142243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_1 (cd01184), RVT-Retrons, PRK09974 (type II toxin-antitoxin system PrlF family antitoxin), TAS_TAS_TAS_TIGR02293