myRT

myRT report for GCA_014164535.1_ASM1416453v1

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Seq: JACJFK010000028.1 Pseudoalteromonas sp. SG41-2 NODE_28_length_68332_cov_64.8, whole genome shotgun sequence (68332 bp)
Overview 1 RT 1: 85-5284 bp Neighborhood of RT #1 [85, 5286] DEDD_Tnp_IS110 RVT-Retrons TIR_2 CvfB Feature: gene Location: 85-798 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 103-517 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 03-51 7 bp Feature: gene Location: 1603-2112 bp Feature: gene Location: 2292-3884 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2547-3156 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2547-31 56 bp Feature: domain Description: TIR_2 Location: 3492-3873 bp Feature: domain Description: TIR_2 Location: 3492-3873 bp Feature: gene Location: 3906-4202 bp Feature: gene Location: 4456-5286 bp Feature: domain Description: CvfB Location: 4459-5284 bp Feature: domain Description: CvfB Location: 4459-5284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), CvfB (COG2996), DEDD_Tnp_IS110 (pfam01548)

Seq: JACJFK010000033.1 Pseudoalteromonas sp. SG41-2 NODE_33_length_48826_cov_67.4, whole genome shotgun sequence (48826 bp)
Overview 1 RT 1: 20889-26147 bp Neighborhood of RT #1 [20889, 26155] RVT-Retrons PRK00331 srlR Feature: gene Location: 20889-21770 bp Feature: gene Location: 21774-22112 bp Feature: gene Location: 22278-23321 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22512-23052 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 512 -2 3052 bp Feature: gene Location: 23470-25290 bp Feature: domain Description: PRK00331 Location: 23473-25288 bp Feature: domain Description: PRK00331 Location: 2 3473-2 52 88 bp Feature: gene Location: 25397-26155 bp Feature: domain Description: srlR Location: 25415-26147 bp Feature: domain Description: srlR Location: 2 5415-2 6147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase), srlR (PRK10434)

Seq: JACJFK010000046.1 Pseudoalteromonas sp. SG41-2 NODE_46_length_19035_cov_64.6, whole genome shotgun sequence (19035 bp)
Overview 1 RT 1: 12816-16676 bp Neighborhood of RT #1 [12816, 16676] Dcc1 RVT-Retrons KTSC Feature: gene Location: 12816-13679 bp Feature: gene Location: 13682-14023 bp Feature: domain Description: Dcc1 Location: 13727-13964 bp Feature: domain Description: Dcc1 Location: 13 727-13 964 bp Feature: gene Location: 14181-15209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14406-14931 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14406-1493 1 bp Feature: gene Location: 15524-16426 bp Feature: domain Description: KTSC Location: 16178-16346 bp Feature: domain Description: KTSC Location: 16178-163 46 bp Feature: gene Location: 16446-16676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcc1 (pfam09724), RVT-Retrons, KTSC (pfam13619)

Seq: JACJFK010000078.1 Pseudoalteromonas sp. SG41-2 NODE_78_length_1604_cov_64.1, whole genome shotgun sequence (1604 bp)
Overview 1 RT 1: 1-1177 bp Neighborhood of RT #1 [1, 1209] RVT-GII GIIM Feature: gene Location: 1-1209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295-919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295-919 bp Feature: domain Description: GIIM Note: maturase Location: 958-1177 bp Feature: domain Description: GIIM Note: maturase Location: 958-1177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)