myRT

myRT report for GCA_014164575.1_ASM1416457v1

Download annotations/find similar RTs

Seq: JACJFL010000049.1 Pseudoalteromonas sp. SG41-1 NODE_49_length_34681_cov_9.3, whole genome shotgun sequence (34681 bp)
Overview 1 RT 1: 3-3206 bp Neighborhood of RT #1 [3, 3529] RVT-GII GIIM EFTU_III DUF4238 Feature: gene Location: 3-1292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-921 bp Feature: domain Description: GIIM Note: maturase Location: 960-1179 bp Feature: domain Description: GIIM Note: maturase Location: 960-1 1 79 bp Feature: gene Location: 1942-2316 bp Feature: domain Description: EFTU_III Location: 1972-2155 bp Feature: domain Description: EFTU_III Location: 1 972-21 55 bp Feature: gene Location: 2438-3529 bp Feature: domain Description: DUF4238 Location: 2456-3206 bp Feature: domain Description: DUF4238 Location: 2456-3206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), EFTU_III (cd03707), DUF4238 (pfam14022)

Seq: JACJFL010000065.1 Pseudoalteromonas sp. SG41-1 NODE_65_length_19168_cov_9.7, whole genome shotgun sequence (19168 bp)
Overview 1 RT 1: 4078-13714 bp Neighborhood of RT #1 [4078, 13722] HTH_17 SMC_N SbcC SMC_N RVT-UG5 nitrilase PRK05367 PRK01202 Feature: gene Location: 4078-4251 bp Feature: domain Description: HTH_17 Location: 4096-4240 bp Feature: domain Description: HTH_17 Location: 4096-42 40 bp Feature: gene Location: 4261-6879 bp Feature: domain Description: SMC_N Location: 4507-4648 bp Feature: domain Description: SMC_N Location: 4507-4648 bp Feature: domain Description: SbcC Location: 4987-5497 bp Feature: domain Description: SbcC Location: 4987-5497 bp Feature: domain Description: SMC_N Location: 5758-6382 bp Feature: domain Description: SMC_N Location: 5758-6382 bp Feature: gene Location: 6904-10107 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 7432-7930 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 7432 -7930 bp Feature: domain Description: nitrilase Location: 9424-10018 bp Feature: domain Description: nitrilase Location: 942 4-10018 bp Feature: gene Location: 10257-13148 bp Feature: domain Description: PRK05367 Location: 10281-13140 bp Feature: domain Description: PRK05367 Location: 102 81-13140 bp Feature: gene Location: 13324-13722 bp Feature: domain Description: PRK01202 Location: 13336-13714 bp Feature: domain Description: PRK012 02 Location: 13336-13714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), SMC_N (pfam02463), SbcC (COG0419), RVT-UG5, nitrilase (cl11424), PRK05367 (aminomethyl-transferring glycine dehydrogenase), PRK01202 (glycine cleavage system protein GcvH)