myRT

myRT report for GCA_014170215.1_ASM1417021v1

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Seq: LZZP01000001.1 Sphingobacterium sp. UME9 SPE9_contig000001, whole genome shotgun sequence (268747 bp)
Overview 1 RT 1: 251263-255562 bp Neighborhood of RT #1 [251263, 255562] Phage_int_SAM_1 INT_RitC_C_like RVT-GII Intron_maturas2 HNHc Feature: gene Location: 251263-252288 bp Feature: domain Description: Phage_int_SAM_1 Location: 251314-251551 bp Feature: domain Description: Phage_int_SAM_1 Location: 251 31 4-251 551 bp Feature: domain Description: INT_RitC_C_like Location: 251644-252202 bp Feature: domain Description: INT_RitC_C_like Location: 251 644-252202 bp Feature: gene Location: 252630-252848 bp Feature: gene Location: 253041-254870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253326-254148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253326-2541 48 bp Feature: domain Description: Intron_maturas2 Location: 254274-254562 bp Feature: domain Description: Intron_maturas2 Location: 254274-254562 bp Feature: domain Description: HNHc Note: nucleases Location: 254703-254850 bp Feature: domain Description: HNHc Note: nucleases Location: 254703-254850 bp Feature: gene Location: 254836-255135 bp Feature: gene Location: 255365-255562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LZZP01000002.1 Sphingobacterium sp. UME9 SPE9_contig000002, whole genome shotgun sequence (76866 bp)
Overview 1 RT 1: 44527-48135 bp Neighborhood of RT #1 [44527, 48135] RVT-Retrons Feature: gene Location: 44527-44667 bp Feature: gene Location: 44762-45925 bp Feature: gene Location: 45930-46784 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46101-46614 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46101-46614 bp Feature: gene Location: 47136-47354 bp Feature: gene Location: 47800-48135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: LZZP01000003.1 Sphingobacterium sp. UME9 SPE9_contig000003, whole genome shotgun sequence (1636325 bp)
Overview 1 RT 1: 167136-173730 bp Neighborhood of RT #1 [167136, 173765] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 167136-167519 bp Feature: gene Location: 167527-168393 bp Feature: gene Location: 169000-170838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169285-170107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169285-170107 bp Feature: domain Description: Intron_maturas2 Location: 170185-170539 bp Feature: domain Description: Intron_maturas2 Location: 170185-17053 9 bp Feature: domain Description: HNHc Note: nucleases Location: 170659-170809 bp Feature: domain Description: HNHc Note: nucleases Location: 170659-170809 bp Feature: gene Location: 171066-171197 bp Feature: gene Location: 171219-173765 bp Feature: domain Description: Bac_Flav_CT_G Location: 171303-173730 bp Feature: domain Description: Bac_Flav_CT_G Location: 1713 03 -173 73 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)

Seq: LZZP01000013.1 Sphingobacterium sp. UME9 SPE9_contig000013, whole genome shotgun sequence (1807299 bp)
Overview 1 RT 1: 1549266-1553289 bp 2 RT 2: 1581917-1590927 bp Neighborhood of RT #1 [1549266, 1553363] DUF932 RVT-GII Intron_maturas2 HNHc DUF1281_C Neighborhood of RT #2 [1581917, 1590947] Bac_Flav_CT_J DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 1549266-1550210 bp Feature: domain Description: DUF932 Location: 1549545-1550190 bp Feature: domain Description: DUF932 Location: 154 954 5-1550190 bp Feature: gene Location: 1550323-1550541 bp Feature: gene Location: 1550734-1552563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1551019-1551841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1551019-155184 1 bp Feature: domain Description: Intron_maturas2 Location: 1551967-1552255 bp Feature: domain Description: Intron_maturas2 Location: 1551967-1552255 bp Feature: domain Description: HNHc Note: nucleases Location: 1552396-1552543 bp Feature: domain Description: HNHc Note: nucleases Location: 1552396-155254 3 bp Feature: gene Location: 1552529-1552828 bp Feature: gene Location: 1552881-1553363 bp Feature: domain Description: DUF1281_C Location: 1553040-1553289 bp Feature: domain Description: DUF1281_C Location: 155304 0-1553289 bp Feature: gene Location: 1581917-1582912 bp Feature: domain Description: Bac_Flav_CT_J Location: 1581923-1582889 bp Feature: domain Description: Bac_Flav_CT_J Location: 1581923-1582889 bp Feature: gene Location: 1582915-1583547 bp Feature: domain Description: DUF4141 Location: 1582933-1583086 bp Feature: domain Description: DUF4 14 1 Location: 1582933-1583086 bp Feature: gene Location: 1583808-1585682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1584132-1584954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1584 132-1584 954 bp Feature: domain Description: Intron_maturas2 Location: 1585083-1585305 bp Feature: domain Description: Intron_maturas2 Location: 1585083-1585305 bp Feature: domain Description: HNHc Note: nucleases Location: 1585485-1585653 bp Feature: domain Description: HNHc Note: nucleases Location: 15854 85-1585653 bp Feature: gene Location: 1586173-1586655 bp Feature: domain Description: Bac_Flav_CT_G Location: 1586287-1586647 bp Feature: domain Description: Bac_Flav_CT_G Location: 1586287-158664 7 bp Feature: gene Location: 1586652-1588325 bp Feature: RT Description: RVT_N Location: 1586706-1586949 bp Feature: RT Description: RVT_N Location: 1586706-158694 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1586994-1587654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1586994 -1587654 bp Feature: domain Description: GIIM Note: maturase Location: 1587705-1587939 bp Feature: domain Description: GIIM Note: maturase Location: 1587705-1587939 bp Feature: gene Location: 1588746-1588886 bp Feature: gene Location: 1588905-1590947 bp Feature: domain Description: Bac_Flav_CT_G Location: 1588908-1590927 bp Feature: domain Description: Bac_Flav_CT_G Location: 1588908-1590927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1281_C (pfam18406), Bac_Flav_CT_J (TIGR03782), DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), GIIM (pfam08388)