myRT

myRT report for GCA_014170285.1_ASM1417028v1

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Seq: LZZR01000045.1 Pseudomonas sp. UME83 PE83_contig000045, whole genome shotgun sequence (112817 bp)
Overview 1 RT 1: 44041-50503 bp Neighborhood of RT #1 [44041, 50517] AAA_15 TOPRIM_OLD RVT-UG17 SLATT_5 HEPN_RiboL-PSP Feature: gene Location: 44041-46458 bp Feature: domain Description: AAA_15 Location: 44044-45364 bp Feature: domain Description: AAA_1 5 Location: 44044-45364 bp Feature: domain Description: TOPRIM_OLD Location: 45529-45775 bp Feature: domain Description: TOPRIM_OLD Location: 45529-45775 bp Feature: gene Location: 46805-47611 bp Feature: gene Location: 47783-49147 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 48011-48614 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4801 1 -4861 4 bp Feature: gene Location: 49144-49698 bp Feature: domain Description: SLATT_5 Location: 49150-49669 bp Feature: domain Description: SLATT_5 Location: 491 50-49669 bp Feature: gene Location: 50104-50517 bp Feature: domain Description: HEPN_RiboL-PSP Location: 50107-50503 bp Feature: domain Description: HEPN_RiboL-PSP Location: 501 07-50503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-UG17, SLATT_5 (pfam18160), HEPN_RiboL-PSP (pfam18735)

Seq: LZZR01000055.1 Pseudomonas sp. UME83 PE83_contig000055, whole genome shotgun sequence (620159 bp)
Overview 1 RT 1: 248061-251282 bp Neighborhood of RT #1 [248061, 251282] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 248061-248660 bp Feature: domain Description: DUF1566 Location: 248490-248646 bp Feature: domain Description: DUF1566 Location: 2 48490-2 48646 bp Feature: gene Location: 248679-249074 bp Feature: domain Description: Avd_like Location: 248745-249051 bp Feature: domain Description: Avd_like Location: 2 48745-2 49051 bp Feature: gene Location: 249138-250439 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 249522-250206 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 4952 2 -2 502 06 bp Feature: gene Location: 250436-250870 bp Feature: gene Location: 250881-251282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: LZZR01000064.1 Pseudomonas sp. UME83 PE83_contig000064, whole genome shotgun sequence (169722 bp)
Overview 1 RT 1: 50533-59386 bp Neighborhood of RT #1 [50533, 59412] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 50533-51789 bp Feature: domain Description: PRK10770 Location: 50587-51781 bp Feature: domain Description: PRK10770 Location: 50587-51781 bp Feature: gene Location: 51806-54607 bp Feature: domain Description: LptD Location: 52175-54593 bp Feature: domain Description: LptD Location: 52175-54593 bp Feature: gene Location: 54740-56452 bp Feature: domain Description: RVT_N Location: 54797-55040 bp Feature: domain Description: RVT_N Location: 54797-55040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55085-55721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55085-55721 bp Feature: domain Description: YkfC Location: 55931-56081 bp Feature: domain Description: YkfC Location: 5593 1-56081 bp Feature: domain Description: HNH Note: nucleases Location: 56258-56396 bp Feature: domain Description: HNH Note: nucleases Location: 56258-563 96 bp Feature: gene Location: 57725-58741 bp Feature: domain Description: COG3178 Location: 57731-58724 bp Feature: domain Description: COG3 178 Location: 5773 1-58724 bp Feature: gene Location: 58738-59412 bp Feature: domain Description: NTP_transferase_like_1 Location: 58744-59386 bp Feature: domain Description: NTP_transferase_like_1 Location: 58744-593 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)